Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01072 ATGATGAAAGTGGGATTCGAGCTGGTTCATGCAAATCATAATCCAAACATGATTCGTCCACACATGCATGAAACATGGGATCACTACTCAAATATTACTTCCTTGCCATTTTCAGCTCCAATTCCAACTCCATCAAACCAATACCCAAAGCCAGCAACAGAAAACCACTGCCTAAACTTGGGGCAGAATGAACTCTCTGATTGGATGGAGGAACACATTGGTGACATCACCAAACACCTTGTTGAAGACTTACCAGAAACCAGTTCTGATAGCTTGATGGCTAATAACACAACAAGGGTTTCCCATCACAACTTTGTTCCCTCACTTTTGCCCAACTTCAGTCAAAGAAAACCTTCATGCTTTAGACCCCAATTTGAGGCCGTCACCAACGACCCCCCGAACTTCAATCTTCACTCAGGTTTAGATGATAGCTACAATGTTTGTGATCAAGGGTTGAGCCTGATAACCCTTCTAATGGAGTGTGCAGTGGCAATTTCAGTTGACAACCTGGGTGAGGCTCATAGGATGTTACTAGAGCTGACACAACTGGCCTCACCCTACAAAGCTTCATGTGCTGAACGTGTTGTTGCTTATTTTGCCAAGGCCATGACTGGGAGGGTGATGAATTCTTGGCTTGGGGTGTGTTCCCCTTTGGTTGATCACAAGAACATTAACTCGGCATTCCAAGTGTTCAACAACGTTTCCCCTTTCATCAAATTTGCTCACTTCACTTCCAACCAGGCAATCCTTGAGGCAGTGAACCATTGTAACAGTATTCACATCATTGACTTGGACATCATGCAAGGGCTGCAATGGCCGGCTTTTTTCCACATATTAGCCACCAGAATGGAGGGTCCACCACAGGTCACGATGACATGTTTGGGAACCTCAATGGAACTCCTTGTTGAAACTGGTAAACAACTCTCAAACTTTGCAAGAAGGCTTGGCATGTCATTGAAGTTCCACCCCATTGCAAGCAAGTTCGGGGAAGTAATTGATGTGTCCATGTTGCATGTAAAGCCTGGCGAGGCAGTGGCAGTGCATTGGTTGCAGCATTCACTCTACGATGCAACTGGACCTGATTGGAAAACACTGAGGCTCCTTGAGGAGTTGGAGCCAAGAATCATTACCTTGGTAGAGCAGGATGTGAACCATGGAGGGTCTTTCTTGGACCGTTTTGTGGGCTCCTTGCACTACTACTCCACCCTTTTTGATTCTCTTGGAGCATACTTGCACTTTGATGATGCAAACAGGCACCGAGTGGAGCATGGCCTTCTCTCTAGAGAGATCAGCAATGTGTTGGCCATAGGAGGCCCTAAGAGGAATGGTGAAGACAAGTTTAGGCAGTGGAGAAACGAGCTTGCTAGGCACTGTTTTGCGCAGGTTCCAATGAGTGCCAATTCAATGGCTCAAGCTCAGTTGATATTGAACATGTTTTCACCAGCTTATGGGTATAGCCTTGCACAAGTTGAAGGCACATTAAGGCTTGGTTGGAAGGATACAAGTTTGTACACGGCTTCTGCATGGACCTGCTGTACTTCTAACTAG 1548 0.4593 MMKVGFELVHANHNPNMIRPHMHETWDHYSNITSLPFSAPIPTPSNQYPKPATENHCLNLGQNELSDWMEEHIGDITKHLVEDLPETSSDSLMANNTTRVSHHNFVPSLLPNFSQRKPSCFRPQFEAVTNDPPNFNLHSGLDDSYNVCDQGLSLITLLMECAVAISVDNLGEAHRMLLELTQLASPYKASCAERVVAYFAKAMTGRVMNSWLGVCSPLVDHKNINSAFQVFNNVSPFIKFAHFTSNQAILEAVNHCNSIHIIDLDIMQGLQWPAFFHILATRMEGPPQVTMTCLGTSMELLVETGKQLSNFARRLGMSLKFHPIASKFGEVIDVSMLHVKPGEAVAVHWLQHSLYDATGPDWKTLRLLEELEPRIITLVEQDVNHGGSFLDRFVGSLHYYSTLFDSLGAYLHFDDANRHRVEHGLLSREISNVLAIGGPKRNGEDKFRQWRNELARHCFAQVPMSANSMAQAQLILNMFSPAYGYSLAQVEGTLRLGWKDTSLYTASAWTCCTSN 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01072 515 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 98 506 IPR005202 -
Phco6g01072 515 Pfam GRAS domain family 154 510 IPR005202 -
Phco6g01072 515 ProSiteProfiles GRAS family profile. 145 510 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01072 Phco-Chr6 10836384 10837931 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco6g01072 GRAS 2.7e-103 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01072 6 10836384 10837931 Phco6g01072 6 10836384 10837931 ECH