Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01071 ATGGATTCTGCAAGGAGTTGGCTTCAGAAGTTCCAGCCTCGTTGGCTTCAGAAGTTCCAGCCTCGTTGGCTTAAGAAGTTCCAGCCTCGAGATAGAACCAGGGCTGCTGCGAAGAAAAAGGAGGAGGATAGTAATGGAGAAAACGAGGATTTGAATGCGGCGGTGGATGAAGCAGTGCTTTCTAGTGTCACGAAACAGAAGGTAGCCGCAGCAAAGCAGTACATTGAAAACCATTACAAGGAGCAAACGAAGAACCTTCAGAAAAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCCGATGTCTCTGAGGAGGATCAAAACAACCTGCTTAAATTTTTGGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTATTGATGATTTTGAGTTATTAACAATGATTGGGAAAGGAGCATTTGGAGAGGTCAGAGTCTGTAGAGAGAAGACTAGTGGTCATGTGTATGCAATGAAGAAGCTAAAAAAATCAGAGATGCTTCGCAGAGGCCAGGATGCTGAATATTTGTATCTCATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTACTAATGAGGAAGGATATCTTGACTGAAGATGAAGCAAGATTTTATGTAGGAGAAACTGTTCTGGCTATTGAATCTATACATAAACACAATTATATACACAGGGATATCAAGCCAGACAATTTATTACTAGAAAGATACGGGCATTTGAAATTGTCAGATTTTGGACTTTGTAAACTATTAGATTGCAATACACTTGAAGAAAAGGATTTTTCTGTGGGTCAAAACGCTTATTCCACAGTTGGTACACGTACACCTGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGTTATGCGATGGAATGTGATTGGTGGTCACTTGGAGCTATCATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGAGCCAATGTTGACTTGTAGGAAGATAGTAAATTGGAAAGCTTACTTGAAATTTCCTGAAGAAGCTAGGCTGTCCCCAGAAGCTAAAGATCTGATTAGTAAGCTTTTGTGTAATGTCAGTCATAGGCTGGGGTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTGTATCATATGGAGGCTGCATTTATTCCTGAGGTCAATGATGAGTTGGACACTCAAAATTTTGAAAAGTTTGATGAGTCTGACAGCCAAACTCAATCATCATCAACATCTGGTCCATGGAGGAAGATGCTTTCATCTGAGGACTTAAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCACCGATTATCAAGTTCCTGGGATGGCTGAACTGAAGAAGAAACAGTCCAAACCAAAGAGGCCAACCATCAAGTCACTTTTTGGTAGGCTTTCTCTTGCTTTGGGACCATTCATTATATTCCTTCAAGCTGTTTTCTTTTAG 1485 0.404 MDSARSWLQKFQPRWLQKFQPRWLKKFQPRDRTRAAAKKKEEDSNGENEDLNAAVDEAVLSSVTKQKVAAAKQYIENHYKEQTKNLQKRKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGIDDFELLTMIGKGAFGEVRVCREKTSGHVYAMKKLKKSEMLRRGQDAEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLERYGHLKLSDFGLCKLLDCNTLEEKDFSVGQNAYSTVGTRTPDYIAPEVLLKKGYAMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWKAYLKFPEEARLSPEAKDLISKLLCNVSHRLGSNGADEIKAHPFFKGVEWDKLYHMEAAFIPEVNDELDTQNFEKFDESDSQTQSSSTSGPWRKMLSSEDLNFVGYTYKNFEIVTDYQVPGMAELKKKQSKPKRPTIKSLFGRLSLALGPFIIFLQAVFF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01071 494 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Phco6g01071 494 CDD STKc_NDR_like 135 443 - -
Phco6g01071 494 Gene3D Phosphorylase Kinase; domain 1 179 408 - -
Phco6g01071 494 SMART pkinase_C_6 380 444 IPR000961 GO:0004674|GO:0005524|GO:0006468
Phco6g01071 494 Pfam Protein kinase C terminal domain 398 442 IPR017892 GO:0004674|GO:0005524|GO:0006468
Phco6g01071 494 Gene3D Phosphorylase Kinase; domain 1 77 178 - -
Phco6g01071 494 SUPERFAMILY Protein kinase-like (PK-like) 110 432 IPR011009 -
Phco6g01071 494 ProSiteProfiles Protein kinase domain profile. 137 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01071 494 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 178 - -
Phco6g01071 494 ProSiteProfiles AGC-kinase C-terminal domain profile. 380 452 IPR000961 GO:0004674|GO:0005524|GO:0006468
Phco6g01071 494 MobiDBLite consensus disorder prediction 27 52 - -
Phco6g01071 494 MobiDBLite consensus disorder prediction 27 47 - -
Phco6g01071 494 Coils Coil 79 99 - -
Phco6g01071 494 FunFam Non-specific serine/threonine protein kinase 194 261 - -
Phco6g01071 494 SMART serkin_6 137 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01071 494 Pfam Protein kinase domain 178 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01071 494 CDD MobB_NDR_LATS-like 71 132 - -
Phco6g01071 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Phco6g01071 494 FunFam Non-specific serine/threonine protein kinase 276 397 - -
Phco6g01071 494 Gene3D Transferase(Phosphotransferase) domain 1 194 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01071 Phco-Chr6 10824288 10832208 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Phco6g01071 Pkinase 2.7e-46 CL0016