Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01068 ATGGATTCGGCTAGGAGTTGGCTTCAGAAGTTCCAGCCTCGAGATAGAACCAGGGCTGCTGCGAAGAAAAAGGAGGAGGATAGTAATGGAGAAAACGAGGATTTGAATGCGGCGGTGGATGAAGCAGTGCTTTCTAGTGTCACGAAACAGAAGGTGGCAGCAGCAAAGCAGTACATTGAAAACCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCCGATGTCTCTGAGGAGGATCAAAACAACCTGCTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTAACAATGATTGGGAAAGGAGCATTTGGAGAGGTCAGAGTCTGTAGAGAGAAGACTAGTGGTCATGTGTATGCAATGAAGAAGCTAAAAAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAGCATGTTAAAGCTGAAAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTTTATTGTTCTTTCCAGGATGCTGAATATTTGTATCTTATTATGGAGTATCTACCGGGCGGGGATATGATGACTCTACTAATGAGGAAGGATACCTTGACTGAAGATGAAGCAAGATTTTATGTAGGAGAAACTGTTCTGGCTATTGAATCTATACATAAACACAATTATATACACAGGGATATCAAGCCAGACAATTTATTACTAGAAAGATACGGGCACTTGAAATTGTCAGATTTTGGACTTTGTAAACCATTAGATTGCAATACACTTGAAGAAAAGGATTTTTCTGTGGGTCAAAACGTGAATGGAACTACACAAAATGATGAGCGGACAGCTCCTAAACGTTCACAACAAGAACAACTTCAACACTGGCAAATGAACAGGAGAACACTTGCTTATTCCACAGTTGGTACACCCGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGTTATGCGATGGAATGTGATTGGTGGTCACTTGGAGCTATCATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTTGACTTGTAGGAAGATAGTAAATTGGAAAGCTTACTTGAAATTTCCTGAAGAAGCTAGGCTGTCCCCAGAAGCTAAAGATCTTATTAGTAAGCTTTTGTGTAATGTCAGTCATAGGCTGGGGTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTCTTCAAAGGTGTTGAATGGGATAAGCTGTATCATATGGAAGCTGCATTAATTCCTGAGGTCAATGATGAGTTGGACACTCAAAATTTTGAAAAGTTTGATGAGTCTGATAGCCAAAGTCAATCATCATCAAGATCTGGTCCATGGAGGAAGATGCTTTCATCTAAGGACTTAAATTTTGTTGGATACACATACAAGAACTTTGAAATTGTCAACGATTATCAAGTTCTTGGGATGGCTGAACTGAAGAAGAAACAGTCCAAACCAAAGAGGCCAACCATAAAGTCACTTTTCGAAACACCAGAGCAAGAGTTTTCTGATACATCTGCTCAAGGAAGCTTTTTAAAGCTCTTGCCACCCCAGTTAGAGATATCTCGTAGAGACAAGAATCTTCCTCCCAGGTCATAA 1659 0.4027 MDSARSWLQKFQPRDRTRAAAKKKEEDSNGENEDLNAAVDEAVLSSVTKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTSGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDAEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLERYGHLKLSDFGLCKPLDCNTLEEKDFSVGQNVNGTTQNDERTAPKRSQQEQLQHWQMNRRTLAYSTVGTPDYIAPEVLLKKGYAMECDWWSLGAIMYEMLVGYPPFYSDDPMLTCRKIVNWKAYLKFPEEARLSPEAKDLISKLLCNVSHRLGSNGADEIKAHPFFKGVEWDKLYHMEAALIPEVNDELDTQNFEKFDESDSQSQSSSRSGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVLGMAELKKKQSKPKRPTIKSLFETPEQEFSDTSAQGSFLKLLPPQLEISRRDKNLPPRS 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01068 552 ProSiteProfiles AGC-kinase C-terminal domain profile. 420 492 IPR000961 GO:0004674|GO:0005524|GO:0006468
Phco6g01068 552 Pfam Protein kinase C terminal domain 438 482 IPR017892 GO:0004674|GO:0005524|GO:0006468
Phco6g01068 552 Gene3D Transferase(Phosphotransferase) domain 1 205 437 - -
Phco6g01068 552 FunFam Non-specific serine/threonine protein kinase 205 272 - -
Phco6g01068 552 SMART pkinase_C_6 420 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Phco6g01068 552 MobiDBLite consensus disorder prediction 282 303 - -
Phco6g01068 552 MobiDBLite consensus disorder prediction 516 532 - -
Phco6g01068 552 ProSiteProfiles Protein kinase domain profile. 121 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01068 552 FunFam Non-specific serine/threonine protein kinase 92 204 - -
Phco6g01068 552 CDD STKc_NDR_like 119 483 - -
Phco6g01068 552 Gene3D Phosphorylase Kinase; domain 1 119 448 - -
Phco6g01068 552 MobiDBLite consensus disorder prediction 505 552 - -
Phco6g01068 552 Pfam Protein kinase domain 122 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g01068 552 Coils Coil 63 83 - -
Phco6g01068 552 MobiDBLite consensus disorder prediction 9 31 - -
Phco6g01068 552 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Phco6g01068 552 MobiDBLite consensus disorder prediction 1 37 - -
Phco6g01068 552 SUPERFAMILY Protein kinase-like (PK-like) 94 473 IPR011009 -
Phco6g01068 552 FunFam Non-specific serine/threonine protein kinase 318 437 - -
Phco6g01068 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 31 471 - -
Phco6g01068 552 CDD MobB_NDR_LATS-like 55 116 - -
Phco6g01068 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Phco6g01068 552 SMART serkin_6 121 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01068 Phco-Chr6 10778127 10785467 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Phco6g01068 Pkinase 1.7e-62 CL0016