Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01066 ATGGAGGAAGAGGAGGATCGTATTTTGCTCTCTAGTTTGGGCGTAAAGTCTGCCAATCCAGAAGACATTGAACGCGACGTTTTGGAAAAGGCTACTAAGAATGATTCAGTGACCGTTACCGAAGCTGAAGGTAGTGCCAAGGAAGAATGTTCTGATTTACCTGAAAATGTCGATTCATCGGCTAATGCTAGAGCTGAACTTCATCAGAAGCTTAGAGCTGTTCAATTTGAAATTGACGCGGTTGCCTCCACCGTTGAGCGGTTGAGAAATGTGGAAAATAATGAAGAATGTAGTGATGCTGGTGAAGACGGCTTGGTGCCAGGGACTGCTGAGGGTGATTCCTCCAACAATTCAAACCTTCAATGTGTTCTTGCTGCCGATAGGTTGAGGAGTCTGAAGAAGACGAAAGCTCAACTCGAGAAAAATCTTTTTAATTTGTCCAAGGATGATGCTTCCAAAGGTGTTGAGGATGAACAATTGATCTTAAGTTTAGTTAGGGAAGAACGGAAGCCCAAGAGGAAGGTTGAAGAAGATAAAAAATTAGACAAAAGCAAGGGAAAACGACTTAAGAAAGTTTCGTTTGATGATGATGTTGATTTTGATACTGTTCTAGATGCAGCCTCTGCCGGCTTTGTTGAAACAGAAAGGGATGAACTGGTGAGGAAAGGAATTTTAACCCCTTTTCATAAGTTAAAGGGCTTTGAGCGCCGTTTTCAACAACTAGAAACATCAACCAGTCATAATGCTGATGAGGAAGAAACTGATGGTGATCTTGCTGCTGCCAGTGTTGAAAGAGCTGCCAAATCCATGTATGAGGCCGCAAGATCTCGCCCAACCACCAAGCTGCTTGAGCCTCAAGATGCACCAAAGCTTGATGCACCCACTTTTCCATTTCGTAGGCTCAAGAAACCGCTACAATCTTCCAAACCTCTAGGTAGAGAGGTGGAGCTAAATAAAGATTCGAAAAGGAAAAAGAGGAGGCCCGCACCTGGTAGGAAGTGGACCAAGCGGGTTTCTTGTGAGGATACACGTCTGGAAGAAAGTGAAAACGCAAATGGTTGCTTGGATACTTCCAGTTTTGAAAATTTAGAAGAACAAGACATTGAATTTGATGATCATGAATCTTCGTATGTAACATTAGAAGGCGGGCTGAAAATCCCTGATAAGATATTTGAAGCTCTGTTTGAGTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGACTTGGTAAAACTGTCCAGGTCTTATCATTTCTTGGTGCATTGCACTTTAGTGGCATGTACAAACCCAGCATTATTGTCTGCCCTGTTACACTCTTGCGACAGTGGAAAAGGGAAGCTAACAAGTGGTACCCAAAATTCCATGTAGAGCTTTTACACGATTCGGCTCACGATTGTGCTCCTAGAAAGAAGCAAGCTAAATCCGAAGAAACAGACTGTGAAAGCAATAGTTCAAGTGACAATGATTATGAGAAAAGTGTGCCATCTAGAAATACAAAAAAATGGGAATCCCTGATAAATCGTGTCATGAGGTCAGAATCTGGATTACTTATCACCACTTATGAGCAGCTCAGAATATTGGGGGATCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAGTTACCCTTGTTTGCAAGCAGCTACAAACTGTACATCGTATCATAATGACTGGTGCACCTATTCAGAATAAGCTGACTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTGCCTATATTTGAAGTTGAATTTGCAGTTCCTATATCAGTTGGCGGATATGCAAATGCTTCACCTTTGCAAGTATCCACGGCATACAGGTGTGCTGTGGTGCTACGTGATTTAATCATGCCTTATCTTCTCCGACGAATGAAGGCTGATGTGAATGCCCAACTTCCAAAGAAGACGGAGCATGTTCTATTTTGCAGCCTTACACCAGAACAAATATCTGCTTACAGAGCATTTTTAGCTAGCACTGATGTGGAGCAAATATTGGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGTAACCACCCTGATCTACTTGAAAGGGATCATGCCTTCAGTGATCCAGATTACGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGGGTTCTCCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAATTTTTTGACAACTTCTGGTCACATTTATCGGAGAATGGATGGTCTCACTCCTGTAAAACAGAGAATGGCCTTAATGGACGAATTTAATGCCTCAAGTGAGATATTTATTTTCATTTTAACGACCAAAGTTGGGGGTTTGGGGACCAATCTTACAGGTGCAGATAGGGTGATCATCTTTGACCCTGACTGGAATCCCTCAACTGATATGCAGGCCAGAGAGCGAGCTTGGCGTATTGGTCAGAAGCGGGATGTAACAGTGTATAGGTTGATAACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACGAATAAGATATTGAAGAATCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCATACTTAATGTGGATGGAGAAACTGGGTCAACTGAAACGTCAAATATTTTTAGTCAAATATCTGAAGAAATAAATGTCATTGGGACACAGAAAGAAAATAAGGATAAGTATGAACATAGTCAAACTGCCATACTGGATTCTGAAGATGTTGCAGTTAGTAATGATAACAAGTCAGAGAGAGGATCTTTGGAGAGAAAGGGGAAAGAGAAGGTTGAACCTAAGAATGGGGTTGATGATGAAACAAATATTTTGAAAAGCCTTTTTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGACGAGCAAGCATCCCAGGTTGCACGAAGAGCTGCAGAAGCTTTACGTCAGTCTCGAATTCTCAGAAGCCATGATAGTGTATCTGTTCCTACGTGGACAGGAAGGTCAGGAACTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTATGAATCCCCTGTTGGTAAATAAAAACAAGGTATCTGACGAACTACCCAGCAAGGGAACTACGAAGTTAAATGGATTCGCTGCTGGGGCATCTGCTGGTAAAGCATTATCTTCTGTCGAACTATTAGCTAAAATTAGAGGTAACCAAGAGAAAGCCATTGGTGCCGGGCTTGAACATCAGTCTGGTACGTTTTCAAGTTCCTCGAATCAAGCAAGATCTATAGATGTTAGATCCTCCAGGGCAACTGCAACTTCATCTGGATTACAACCTGAAGTATTGATTCGGAAAATCTGCACTTTTATACAACAGCGAGGGGGTAGTTCTGATTCAGCCAGCATAGTTCAGTACTTCAGGAAACTTATTGCCTCAGAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATTGCGACTCTGCATAAAGGATCAAATGGATCCCATTGGGTTCTTAAACCAGACTACCAATTCTGA 3678 0.4184 MEEEEDRILLSSLGVKSANPEDIERDVLEKATKNDSVTVTEAEGSAKEECSDLPENVDSSANARAELHQKLRAVQFEIDAVASTVERLRNVENNEECSDAGEDGLVPGTAEGDSSNNSNLQCVLAADRLRSLKKTKAQLEKNLFNLSKDDASKGVEDEQLILSLVREERKPKRKVEEDKKLDKSKGKRLKKVSFDDDVDFDTVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQLETSTSHNADEEETDGDLAAASVERAAKSMYEAARSRPTTKLLEPQDAPKLDAPTFPFRRLKKPLQSSKPLGREVELNKDSKRKKRRPAPGRKWTKRVSCEDTRLEESENANGCLDTSSFENLEEQDIEFDDHESSYVTLEGGLKIPDKIFEALFEYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREANKWYPKFHVELLHDSAHDCAPRKKQAKSEETDCESNSSSDNDYEKSVPSRNTKKWESLINRVMRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPIFEVEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTPEQISAYRAFLASTDVEQILDGHRNSLYGIDVMRKICNHPDLLERDHAFSDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFLTTSGHIYRRMDGLTPVKQRMALMDEFNASSEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFILNVDGETGSTETSNIFSQISEEINVIGTQKENKDKYEHSQTAILDSEDVAVSNDNKSERGSLERKGKEKVEPKNGVDDETNILKSLFDANGIHSAMNHDLIMNAHDEEKMRLDEQASQVARRAAEALRQSRILRSHDSVSVPTWTGRSGTAGAPSSVRRKFGSTMNPLLVNKNKVSDELPSKGTTKLNGFAAGASAGKALSSVELLAKIRGNQEKAIGAGLEHQSGTFSSSSNQARSIDVRSSRATATSSGLQPEVLIRKICTFIQQRGGSSDSASIVQYFRKLIASEDLALFKNLLKEIATLHKGSNGSHWVLKPDYQF 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01066 1225 SMART helicmild6 768 851 IPR001650 -
Phco6g01066 1225 PANTHER SNF2/RAD54 FAMILY MEMBER 157 1206 - -
Phco6g01066 1225 CDD SF2_C_SNF 737 862 - -
Phco6g01066 1225 MobiDBLite consensus disorder prediction 1126 1151 - -
Phco6g01066 1225 MobiDBLite consensus disorder prediction 1128 1151 - -
Phco6g01066 1225 MobiDBLite consensus disorder prediction 1 58 - -
Phco6g01066 1225 MobiDBLite consensus disorder prediction 93 117 - -
Phco6g01066 1225 CDD CSB_WHD 1158 1224 - -
Phco6g01066 1225 MobiDBLite consensus disorder prediction 956 980 - -
Phco6g01066 1225 Gene3D - 661 966 IPR027417 -
Phco6g01066 1225 MobiDBLite consensus disorder prediction 273 335 - -
Phco6g01066 1225 Pfam SNF2-related domain 397 719 IPR000330 GO:0005524|GO:0140658
Phco6g01066 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 655 IPR027417 -
Phco6g01066 1225 MobiDBLite consensus disorder prediction 1045 1065 - -
Phco6g01066 1225 Gene3D - 364 654 IPR038718 -
Phco6g01066 1225 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 406 605 IPR014001 -
Phco6g01066 1225 MobiDBLite consensus disorder prediction 307 323 - -
Phco6g01066 1225 CDD DEXHc_ERCC6 394 604 - -
Phco6g01066 1225 FunFam DNA excision repair protein ERCC-6 662 941 - -
Phco6g01066 1225 Pfam Helicase conserved C-terminal domain 744 851 IPR001650 -
Phco6g01066 1225 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 742 901 IPR001650 -
Phco6g01066 1225 SMART ultradead3 390 622 IPR014001 -
Phco6g01066 1225 MobiDBLite consensus disorder prediction 484 509 - -
Phco6g01066 1225 Coils Coil 122 149 - -
Phco6g01066 1225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 914 IPR027417 -
Phco6g01066 1225 FunFam Protein CHROMATIN REMODELING 8 372 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01066 Phco-Chr6 10758385 10764692 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco6g01066 SNF2_N 1.6e-60 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01066 6 10758385 10764692 Phco6g01066 6 10758385 10764692 ECH