Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01028 ATGGCTTCTGCAACAACTGCAAATGACGCTGCTTCTTCCTTCGGATCTCCCTGCGGGGCATGCAAGTTCCTGCGAAGAAAATGTGCTGCAGACTGCATCTTTGCACCCTACTTTTGCTCCCAACAAGGACCTGCTAGATTCGCAGCCATTCATAAGGTTTTCGGGGCTAGCAACGTTTCCAAGTTGCTCTTGCGTATACCAGATAACGCTCGCTTTGAGGCAATGGTCACAATCGCTTACGAAGCCCAAGCTCGCATCAGAGACCCTGTTTACGGTTGTGTCTCCCATATATTCGCCTTGCAGCAACAGGTAGCAAGCCTGCAGGCAGAGCTAGTGCAAATGAAGGCACAGCTGGATCAGAACCAGATGGTGTGCAGGAACTTGGAGAATCACTGGTCGGAGAATGTTGGACAAGCATTGAATCCATTATGTCCCACTTCCATGAATAACCCTATTTCTCCTCAGAGCTCATTTGATTCAATTGATTACAGCAGCAGTATGAATGATGGAATGAGCATGCAAGATGTACAAAGCGGAGTGGATTTCTCATTCCAAGCTTGTTCTTGGAAAAGATCATATAACAATGACTTGGGTGAGCTGCAAGAATTGGCACTCAGGATGATGAGGAAGTGTGATTAG 639 0.471 MASATTANDAASSFGSPCGACKFLRRKCAADCIFAPYFCSQQGPARFAAIHKVFGASNVSKLLLRIPDNARFEAMVTIAYEAQARIRDPVYGCVSHIFALQQQVASLQAELVQMKAQLDQNQMVCRNLENHWSENVGQALNPLCPTSMNNPISPQSSFDSIDYSSSMNDGMSMQDVQSGVDFSFQACSWKRSYNNDLGELQELALRMMRKCD 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01028 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 169 - -
Phco6g01028 212 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Phco6g01028 212 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Phco6g01028 212 Coils Coil 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01028 Phco-Chr6 10212275 10213372 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco6g01028 LOB 2e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01834 2 48888028 48889398 Phco6g01028 6 10212275 10213372 PCT