Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01024 ATGGAATTCAGCTGCCAAGAAGATTATTCCAAAAGCTCCAGCGAAGAAATTGATCGATCATCTGAACAGAATGATGAGATGGGCACTGGCAGATCCTACGAGTGTGTCTTTTGCAAGAGAGGCTTCACCACTGCACAGGCTTTGGGTGGACACATGAACATACACAGAAAAGATAGGGCCAACAAGGCCAAACCCAATTTTCCTCCTTCCAGTTCAACCAAGGTTGATGACACTAATAGCTATGCAGATCTCGGCTTATACTCACCATCATCAAATACAACCTATCTTGCAAGAGGGAATTACTATTCCACTCTTCCTGATCCAGAGGTAGACATTAATTACAACTACTACCATCAATTATATTTTCCCTCACACGCTTGTGCAGCCAAATCACCTTCACACGTACAATACAGTGAGGTTTTGTGTGTAGAGAACCAAAGGGATCCTCAACTTCTGTTTGGACAAGATTGGAGACAAAGGGGTTTGAGTCTGTACACCAATCCACTATGTGCACGTGAAAATAAAGACAAGACAGAAAACAACAGTGAAGAGGACGATCTGGATTTGGAGCTTAGACTTGGTCATCATCCATAG 594 0.4293 MEFSCQEDYSKSSSEEIDRSSEQNDEMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANKAKPNFPPSSSTKVDDTNSYADLGLYSPSSNTTYLARGNYYSTLPDPEVDINYNYYHQLYFPSHACAAKSPSHVQYSEVLCVENQRDPQLLFGQDWRQRGLSLYTNPLCARENKDKTENNSEEDDLDLELRLGHHP 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01024 197 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Phco6g01024 197 Gene3D Classic Zinc Finger 7 84 - -
Phco6g01024 197 MobiDBLite consensus disorder prediction 9 25 - -
Phco6g01024 197 MobiDBLite consensus disorder prediction 173 197 - -
Phco6g01024 197 Pfam C2H2-type zinc finger 33 57 - -
Phco6g01024 197 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Phco6g01024 197 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Phco6g01024 197 PANTHER OS07G0101800 PROTEIN 10 196 - -
Phco6g01024 197 MobiDBLite consensus disorder prediction 1 28 - -
Phco6g01024 197 MobiDBLite consensus disorder prediction 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01024 Phco-Chr6 10166719 10167312 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g01024 zf-C2H2_6 1.7e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01024 6 10166719 10167312 Phco6g01024 6 10166719 10167312 ECH
Phco2g01829 2 48842811 48843299 Phco6g01024 6 10166719 10167312 PCT