Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01022 ATGGAAGGAAACTATCTGAACAGAAATAGTACTAGTACTCCACAGAGAGAAGATAGCTTTGGCTTTGAGGAGCATACATGGGGAACTTCATGGCCTGCTAGAAACTATGCTTGCAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCATTGGGTGGACACATGAATGTTCACAGAAGGGATAGGGCTAGATTGAGATCATCCTTATCTTCATGGGTTTCTGAATGCCCTAAGCCTAACCCTAGCACTAAGCCTAATAACCCAACTCTTCTGCCAACATCTTCATCACCATCTCCTTTATCTGATGACCCTTTGAACTGTGCACATCCTTCTCCACGTTGCAGTCCTTGTCTCACTTTGTCTTCTTCACCCTTCCCAGCTTCTTCCAGTGGAGACAAGAAACCAAGACTCACACCTTCTCATTCTCAGTTTCCACTTTTGAGTCCTCAAAGCTGCGAAATTAAGATGATGATGAGTAACAACACAAGGAGTGGTTTCGGTGCTGAGGAGGAAATGAAGGGCTGTGTAGAGGAGGAGGAGCACAAGGGTTTCAAGGACAATGAGCAAAACATCACGTTGGAATTAGGAATAGGGTTGCTTAAACACGAAGAGGAGAAGTTAGATTTGGAGCTTCGACTCGGGCATTTCTAG 651 0.4485 MEGNYLNRNSTSTPQREDSFGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPSTKPNNPTLLPTSSSPSPLSDDPLNCAHPSPRCSPCLTLSSSPFPASSSGDKKPRLTPSHSQFPLLSPQSCEIKMMMSNNTRSGFGAEEEMKGCVEEEEHKGFKDNEQNITLELGIGLLKHEEEKLDLELRLGHF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01022 216 SMART c2h2final6 36 58 IPR013087 -
Phco6g01022 216 MobiDBLite consensus disorder prediction 87 102 - -
Phco6g01022 216 MobiDBLite consensus disorder prediction 1 17 - -
Phco6g01022 216 Gene3D Classic Zinc Finger 18 80 - -
Phco6g01022 216 MobiDBLite consensus disorder prediction 1 22 - -
Phco6g01022 216 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Phco6g01022 216 Pfam C2H2-type zinc finger 36 60 - -
Phco6g01022 216 PANTHER OS07G0101800 PROTEIN 14 215 - -
Phco6g01022 216 SUPERFAMILY beta-beta-alpha zinc fingers 33 62 IPR036236 -
Phco6g01022 216 MobiDBLite consensus disorder prediction 70 105 - -
Phco6g01022 216 MobiDBLite consensus disorder prediction 125 146 - -
Phco6g01022 216 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01022 Phco-Chr6 10143034 10143684 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g01022 zf-C2H2_6 5.9e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01022 6 10143034 10143684 Phco6g01022 6 10143034 10143684 ECH
Phco2g01828 2 48825057 48825689 Phco6g01022 6 10143034 10143684 PCT