Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01019 ATGATGGGTGAGAAGTTTTGTGTGAATGAAGAAGACAAGGGTGTGTTGGAGTCTGTGTTGGGCGCAGAGGCTGTTGCGTTTTTCATTTCAGCACTTTCCAATAATGTCTTTTCCAGCGTTGTTACTCCTTCGGCCGGTGCTGACTCATCCCTCCGTCAGAGGTTGTGCCAGCTTGTTGAGGGTTCCAAGTGGAACTATGCAGTGTTTTGGCAAGTTGCTGGCTTGAAATCTGGTGGTTCTGCGTTGATTTGGGGTGATGGGCATTGCAGCGATCCCAAAGGGAAGAGGAGTGGAGTTGGGAAGGAGGATGAGCAGGAGGTGAGAAAGATGGTGCTGCAGAAGCTTGATGCCTGCTTTGGTGGGTGTGTGTCGAAAGAGGCTAACTATGCAAGATTGGATAGGTTGTCTGATTTGCTCATGTTTTACTTATCCTCGATGTGTTATATATTCGGTTTTGATTCGCCATGTGGCCCTGGGAGTTCATTCAAATCTGCTAAATTAATTTGGACATCTGATTCTGCTGGTTGTTTAAATCAATTAGAATCTAGATCATTTCTAGGGAAAGTGGCTGGTCTTCAAACTGTTGTTTTTGTTCCTCTCAAATCTGGGGTGGTGGAGCTTGGTTCGAAAGAAGTGGTGTCTGAAGAACAGGGTTTTGTGGAGATGGTCAAGGCAGCATTTGGGGAATCCAGTCCCGGACAGGCTAAGGTATTTCCGAAGATTTTTGGGCACGAGTTAAGCCTGGGGGATACAAAATCTCAGTCTATAACTATTAGTTTCTCCCCGAAGGTGGAAGATGATCCTGGTTTTACTTCAGACTCCTTTGAAGTTCAAGCACTGGGGGTGAACCATACTTACGGAAATTCTTCCAATGGGACTTTAGGGGACAGTAGTGAAGGGAAAATGTTCCCTCAGTTGAATCAAATGATGGGTGGGAATTTTAATGCTCAAGCAAGGGTTCCTTGTCTAGATCTCGGTAATGAAGACACGTCCTCAATTCATGCAGATGAGAGGAAGCCCAGAAAAAGAGGTAGAAAACCTGCCAATGGGAGAGAGGAACCTCTGAATCATGTTGAAGCAGAGAGACAAAGACGTGAGAAGCTTAACCAGAGGTTTTATGCCTTAAGAGCTGTTGTCCCCAATATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTCATCACCGATCTCCAGATGAAGATCAAAGTGTTGGAAGCTGAGAAGAACATGTTTAACAACAAGGACCAGAGGTTATCCTTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACACAGTTGTGACAGTAAGATGCCCTTTAGATGCTCACCCTGTTTCTGATGTTGTTAAAACTTTCAGGGAGCATCAAATTGTGGCTCAAGACACCAGTGTTTCTACTACAGATGATAAAATCATCCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCCATTCAGCTGAAAGAAAAGCTTGAAGCGGCCCTATCCAAAACTTTACCCTGA 1521 0.4484 MMGEKFCVNEEDKGVLESVLGAEAVAFFISALSNNVFSSVVTPSAGADSSLRQRLCQLVEGSKWNYAVFWQVAGLKSGGSALIWGDGHCSDPKGKRSGVGKEDEQEVRKMVLQKLDACFGGCVSKEANYARLDRLSDLLMFYLSSMCYIFGFDSPCGPGSSFKSAKLIWTSDSAGCLNQLESRSFLGKVAGLQTVVFVPLKSGVVELGSKEVVSEEQGFVEMVKAAFGESSPGQAKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSFEVQALGVNHTYGNSSNGTLGDSSEGKMFPQLNQMMGGNFNAQARVPCLDLGNEDTSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMFNNKDQRLSLPDMDFQEREDDTVVTVRCPLDAHPVSDVVKTFREHQIVAQDTSVSTTDDKIIHTFSIRTEGGEAAAIQLKEKLEAALSKTLP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01019 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Phco6g01019 506 FunFam Transcription factor bHLH13 345 419 - -
Phco6g01019 506 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Phco6g01019 506 PANTHER MYC 41 500 IPR045084 GO:0003700|GO:0006355
Phco6g01019 506 Coils Coil 398 418 - -
Phco6g01019 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 421 IPR036638 GO:0046983
Phco6g01019 506 MobiDBLite consensus disorder prediction 330 357 - -
Phco6g01019 506 CDD bHLH_AtAIB_like 349 412 - -
Phco6g01019 506 CDD ACT_UUR-ACR-like 436 505 - -
Phco6g01019 506 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 227 IPR025610 -
Phco6g01019 506 Gene3D - 345 418 IPR036638 GO:0046983
Phco6g01019 506 MobiDBLite consensus disorder prediction 326 357 - -
Phco6g01019 506 SMART finulus 358 407 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01019 Phco-Chr6 10071338 10072858 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g01019 bHLH-MYC_N 8.5e-42 CL0161