Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01007 ATGGAAGAGGTTGAGCAAGCTAATAGAACAGCTGTTGAAAGCTGTCATAGGGTTCTGAGTTTGTTGTCTCAACCAAGGGATCAGGTTCAGCATAGGAATTTAGTGATGGAAACTGGGGATGCTGTGGTAAGGTTCAAGAAGGTTGTGTCCTTGCTTCACAGTGGTTTGGGTCATGCAAGAGTGAGGAAGCTTGAAAACCCTCAAGCCCCCTTTACCCATCAAATTATCTTCTTAGACAACCCAAATTGCAAAACCAACAATCATCACTCAAAAAATCTGCAGCTTTTCCAAGCCAGCTTTCCTGACAATTCACTTCAGGAAATGGGTTCAACCATTAAACATTCACTCTCTCTTGGACAGCCCTCTTTGGAATTGAGCTCCAGTGGGAAAAGTCCTCTTCACCTCACTCAGCATGCTTCTTCAGCTCACTATCACTTCTTTCAGCAACAGCAACAGCAAAGGGCGTTGCTCCAGCAGCAACAGCAGCAGCATCAACAACAACAGCAACAGTTGAAGCATCAAGCGGAAATGATGTTCCGAAGGAGCAATAGTGGCATAAACCTGAATTTTGACAGCACTAGCTGCACACCAACAATGTCATCCAATAGGTCTTTTATTTCTTCCTTGAGCATAGACGGAAGTGTGGCTAACTTGGATGGAGGTGTCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATTCGCAACAGCACAAGAGAAAATGTTCTGCAAGAGGTGATGAGGGAAGCTTGAAATGTGGGAGCAGTTCTAGATGTCATTGCTCTAAGAAGAGGAAACATAGAGTGAAGAGACCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATTCCTCCTGATGATTATTCATGGAGAAAGTATGGCCAAAAGCCAATCAAGGGCTCTCCTCACCCTAGGGGATACTACAAATGCAGCAGCATGAGAGGGTGTCCTGCTAGAAAGCATGTTGAGAGGTGTTTGGAAGAGCCGACCATGCTAATTGTCACCTATGAAGGCGAACATAACCACCCTAAGTTACCAACGCAATCTGCAAATGCATGA 1068 0.4466 MEEVEQANRTAVESCHRVLSLLSQPRDQVQHRNLVMETGDAVVRFKKVVSLLHSGLGHARVRKLENPQAPFTHQIIFLDNPNCKTNNHHSKNLQLFQASFPDNSLQEMGSTIKHSLSLGQPSLELSSSGKSPLHLTQHASSAHYHFFQQQQQQRALLQQQQQQHQQQQQQLKHQAEMMFRRSNSGINLNFDSTSCTPTMSSNRSFISSLSIDGSVANLDGGVFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSSRCHCSKKRKHRVKRPIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSANA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01007 355 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g01007 355 Coils Coil 147 177 - -
Phco6g01007 355 Gene3D WRKY domain 274 349 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco6g01007 355 ProSiteProfiles WRKY domain profile. 282 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g01007 355 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 353 IPR044810 GO:0003700
Phco6g01007 355 SUPERFAMILY WRKY DNA-binding domain 285 347 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco6g01007 355 Pfam Plant zinc cluster domain 240 285 IPR018872 -
Phco6g01007 355 SMART WRKY_cls 287 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g01007 355 MobiDBLite consensus disorder prediction 229 249 - -
Phco6g01007 355 FunFam WRKY transcription factor 65 271 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01007 Phco-Chr6 9889068 9890782 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco6g01007 WRKY 5e-26 CL0274