Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00975 ATGTTCCCTTCAGTTATGTCCAATTCCAATTCCTTGTCCGAAGAGGCAACTGTCTCCTGTGGTACAAGAATCGGTGGACTCAATCACGTAGTCACAGCAATCATTTCTCCCCAACAGCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCGGATGCTGAAGTGATTGCTCTATCACCGAAGACTCTTCTAGCTACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAGCTTCATAGGAGAGGGCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAAAGCATACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCTTCAAGGGCTCTCGGGGACCTCACAGGAATTAAGAAACATTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCGGTTCAGTCCGATTGGAAAGCTCACTCCAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACTCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGACTGTCAGCAAACCAATTGGCTACCAGCACCACAAACCCCTTAGTCCAATCCCTCTTCCTTTTCCCAACCCAACAACAACACACCAACAACAACAACACCAACTTCATCAATCACTGGGACCCAAACCCTAACCCTAGCAACCTTCCCACCTTCCACAACACCATCAAACCTGAATCTCACAACTTCCACTCCCACATCTTCAACAACTACAACATCTCCTCTCCTTCATTGCTTCTTCATCATCCCCCCAAGACCATGATAACCTCACCCTACCGTGACCTCCACGTCCGCCCCTCCAACGCTGCCACATCAGCGCACCTCTCCGCCACTGCGCTGCTCCAGAAGGCTGCAACCTTTGGCGCCGCCGCTATCACGGGTCCCACTCACGTGACTCCACTCAGCATGGCCGAGTTGGGAACCGTGTCGACTCAGCTCGACTCGGTGCCACCCGAACGGTACATCCACATAAGGGACCTCAAGAATAGCGACGGTCTCACCAGGGACTTTCTTGGCCTCACCAATAGTGACGCGGTTGACGTTAGCATCGACGTCAAGGACATGCTAACGTTCACGGGAGGGAGCGTAGAGTACAACCATTACCACCACCAACCCTCCTACGAGCACCATCACAATAGTAACTCGCTTTTTAAGCCACAGCATGGGTTTGGATTCCTCCGGACAACCACTGGCCCCGAATCCTGGGGAAATTGTGAGTGA 1335 0.4981 MFPSVMSNSNSLSEEATVSCGTRIGGLNHVVTAIISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLATSTTNPLVQSLFLFPTQQQHTNNNNTNFINHWDPNPNPSNLPTFHNTIKPESHNFHSHIFNNYNISSPSLLLHHPPKTMITSPYRDLHVRPSNAATSAHLSATALLQKAATFGAAAITGPTHVTPLSMAELGTVSTQLDSVPPERYIHIRDLKNSDGLTRDFLGLTNSDAVDVSIDVKDMLTFTGGSVEYNHYHHQPSYEHHHNSNSLFKPQHGFGFLRTTTGPESWGNCE 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00975 444 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Phco6g00975 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Phco6g00975 444 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 37 401 IPR031140 -
Phco6g00975 444 FunFam protein indeterminate-domain 12-like 52 120 - -
Phco6g00975 444 Gene3D Classic Zinc Finger 52 121 - -
Phco6g00975 444 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Phco6g00975 444 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Phco6g00975 444 SMART c2h2final6 73 95 IPR013087 -
Phco6g00975 444 SMART c2h2final6 114 144 IPR013087 -
Phco6g00975 444 SMART c2h2final6 149 169 IPR013087 -
Phco6g00975 444 Gene3D Classic Zinc Finger 142 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00975 Phco-Chr6 9542258 9545336 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g00975 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01478 11 11290311 11293516 Phco6g00975 6 9542258 9545336 ECH
Phco6g00975 6 9542258 9545336 Phco6g00975 6 9542258 9545336 ECH
Phco2g01780 2 48340210 48343615 Phco6g00975 6 9542258 9545336 PCT
Phco11g01478 11 11290311 11293516 Phco6g00975 6 9542258 9545336 PCT