Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00972 ATGATTCCGAAGGCTCTGTCACAGTACCTATCATTCGCGTTAGGGTTTCTGCTATGCGCCACAATCCCTTTTGTTCACGCCGAGTCGTCCACGTGCTTGACGGTCTACAAGAACGGCGGTGCTCCGGCGGTGTTTCAGTCCCCAAAATGTCCCCGCTGGAAGCTCTCCGACTATGATTCACCTCCCCAAACCACCGCGCGTTGCCAGATTGCGATGCTCCAAGGCCGCAGAAACTCTCAAGAGGATCGCGCTGTCTGCGTCCTCGATGTTCGCATTCCCTTCCCCGGTGCGAACGGGATCAAGGAGGTTGCGGTTGGCATTGTGGCCGTTTTTGACGGTCATAACGGTGCAGAAGCTAGCGAGATGGCGTCGACACTTTTGTTGGAGTATTTTGTTCTGCATACTTATTTTCTCCTCGATGCCGCCTTCTCTGTTATTTCGAAGACTTCAACAGAAACATTGCTTCACAAGAGAGACCGTGATCGTGCAAACTTACTGCATAGATGGAAGGAGATTATAGGTTCGGAATGGCATGAACTGCATTTCGAAAGGTTGCAGAATACATTTTCTCCAAATTCTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCGTTATTGAGAGCAATCCATGACATTGATGCTAAATTTTCTGAGGAGGCCTCTAGAAATAATCTTCACTCTGGATCAACAGCTACCATTGTTTTGGTAGCGGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCATCTTGTGCTCTGAAAATTTTCAGTCTCCCAGAGAGGCTAAAGACTTATTATTAAAGCTATATAGACAGAAAGAGCATGACGGTTCTGTTTCTGTGTGGGATCGTGAAAAGTACAAACTGGCTTCATCCCATGGTCTCACTCATTTTGCTGTAAAGGAATTGACCAGTGATCATCATCCAGACCGACATGATGAAAGAAATCGGGTGGAAACAGCTGGTGGTCAGGTTCAAAATTGGGGTGGGGTGCCTCGCATAAATGGTCAGCTGGCTATTTCACGGGCTATCGGTGATGTACCCTTTAAAAGTTATGGTGTTATATCTACACCAGAAGTGACTGATTGGCAGCCTCTGACTACTAATGATAGCTATTTGGTGGTAGCATCAGATGGTGTATTTGAGAAGATGAGCTTGCAGGATGTTTGTGATTTGTTGTGGGATGTGCACCGTTACAGTAACATGAGATCAGAGTGTACCCATTCTTCCTACTCGTTGGCAGATTTAATTGTTAATAATGCCTTCAAAAAGGGCAGTACGGACAATGTGGCAGCCATTGTCATTCCTCTGGATTCTGTCAAATCCTCTGCAAACTCACTTAGGGGAAGTTATATTGGAAAGAGGGATGCAGGTTTCCCATTATTTGGTTTGCAGGAAACTTCCTTCAAAAGCTCATCAGTTAATGGCATCTCGTCTGATCTTATGCACTTGGAGCACCCTCATCTGGTAGATACCAAGTTTAAGCGAATATTGGTTGAAGTAAAAGATGGTGATTTTGGCTGTTTTTATTTATCCGAAAATCTTGATGAACCAGAGGACTCCAAGCAGATTGCCAAAAAAACTGACTGGGATGACTATTTGAATGAACTACCTCCTCCTCTACCAAATGCCCTTTGTCATCATGCCACTTCAGGTGGGCCTGTAAATTTATACAATAACCAAAACTTTTGCTTTCACCTTGGTCCAACTCTTAATGAAGCTAAAGACCGATGCATAAATCCTGAAGGTTTTGCTAGTTTCATTGGTCTTCTTGAATCAATTCCTTTACATGATACTGATTCCAGTAATGGGTCTTCCGATTATTCAATGCCTGATTTGAGGTATGTGTTGAAGAAGAGTTTTGGACGTGGATCATTTGGTGAAGTATGGTTGGCTTTTCACTGGAGTTGTAATCAAGATAGTAATGCTGCAAAAAGGAGCAGGGATGATACAAATACAAGCAGCAGCTCAACTGCTTCTGATTGTGAAAACGGTCCTTCTAACTACACCCTGTACATTTTGAAACGTATAATGGTGGAGAGGGGGTCAGCTGTTTACTTAAGTGGGCTAAGGGAGAAGTACTTTGGAGAAATTTTTTTAAATGCCTCTACATGCTTTGAAGATACACTATCGGTGGGAAAGTCAAACTGTGTCTTGGAATCATCATCACAGTTTGGTCCAGAGAACTCATTTCCGAACAAATTTCGACTACAAAAAACCCCATATGAAGAAGGTTTGAACCATATTGCAAGATATGTGGAATCTTTTGAGTCTCAAGCAAACGAAATTTGGCTTGTATTTAGTTTTGAAGGTGTATCACTGTCAAAACTTCTATATGCCGTGGAAGATGCATATGGTACTGCTGAGCAAGAAAGACTTGAGCAAGCTAAACATATTCAGATACTACGACCCTCAAAGTGGTGGCATTGGTTGAAAACAACAGAAGAAGGGCAGGCAGAAATGCGCAACCTTATCTGGCAGCTGTTATTAGCTCTCAAGTCCTGTCATGATCGCAACATCACACACAGAGATATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAAACAGGGAGATGCTTGAAAGAGATTCCCACTAAAGTTAATAATTTTTCCACCAAAATGCGTATTATTGACTTTGGAAGTGGAATTGATGAATACACATTAAATAATTTATATGGTTCTACTGGGCCTTCGAGAGCTGAACAAACCTATGAGTATACTCCTCCTGAAGCTTTACTAAATGCTACATGGTATCAAGGGCCAACAAGCTCAACTTTGAAATATGACATGTGGAGCGTTGGTGTTGTGATGTTAGAGTTGGTCTTAGGGACACCGGATGTTTTTCAGATAAATGCTTTAACACGGGCTCTATTAGATCAACATCTAGAAGGCTGGAATGAGGGCGTGAAGGAGCTGGCATACAAACTTAGATCATTCATGGAATTGTGCATTTTAATCCCTGGGATCTCCAGGTCCAGCAGTTTCTCAAAAAAGTATCACAGAGTGAACCAAGTTGGAGTTTCACCTGCATCTTGGAAATGCTCCGAAGAATTCTTTTCTCGTCAAATTAAGAATAGAGATCCCCTTAAAATAGGTTTTTCAAACATCTTGGCTTTACGGTTAGTGCGGCGTCTGTTAAATTGGGATCCAGAGGATCGGCCAAGTATTGATGAGGCTCTTCAACATCCTTATTTCCAACATCCCCGTAGAGAGCTGTTTTTGTTATCTTTTGGGTCTATGTGCTGTAATGACATTATGAAAGTAAATAGATCAATGTTGCCTCTGCTTAGAACAGCTTTACGGCGCCATCGGCCAAACATGATGAGAATGAGCCGAAATGGGGATGTGGTATCTGGCACAAATGTCTTCAGCTGTCCAGCTTTCGAAAATTCCACGGTATTGAAGGACAAAAATCTAAAGCAATTGTGTAGAGAGAATACAGGTCGGTGA 3468 0.4236 MIPKALSQYLSFALGFLLCATIPFVHAESSTCLTVYKNGGAPAVFQSPKCPRWKLSDYDSPPQTTARCQIAMLQGRRNSQEDRAVCVLDVRIPFPGANGIKEVAVGIVAVFDGHNGAEASEMASTLLLEYFVLHTYFLLDAAFSVISKTSTETLLHKRDRDRANLLHRWKEIIGSEWHELHFERLQNTFSPNSDDSFHLEILKEALLRAIHDIDAKFSEEASRNNLHSGSTATIVLVADDKILVANIGDSKAILCSENFQSPREAKDLLLKLYRQKEHDGSVSVWDREKYKLASSHGLTHFAVKELTSDHHPDRHDERNRVETAGGQVQNWGGVPRINGQLAISRAIGDVPFKSYGVISTPEVTDWQPLTTNDSYLVVASDGVFEKMSLQDVCDLLWDVHRYSNMRSECTHSSYSLADLIVNNAFKKGSTDNVAAIVIPLDSVKSSANSLRGSYIGKRDAGFPLFGLQETSFKSSSVNGISSDLMHLEHPHLVDTKFKRILVEVKDGDFGCFYLSENLDEPEDSKQIAKKTDWDDYLNELPPPLPNALCHHATSGGPVNLYNNQNFCFHLGPTLNEAKDRCINPEGFASFIGLLESIPLHDTDSSNGSSDYSMPDLRYVLKKSFGRGSFGEVWLAFHWSCNQDSNAAKRSRDDTNTSSSSTASDCENGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEIFLNASTCFEDTLSVGKSNCVLESSSQFGPENSFPNKFRLQKTPYEEGLNHIARYVESFESQANEIWLVFSFEGVSLSKLLYAVEDAYGTAEQERLEQAKHIQILRPSKWWHWLKTTEEGQAEMRNLIWQLLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPTKVNNFSTKMRIIDFGSGIDEYTLNNLYGSTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELVLGTPDVFQINALTRALLDQHLEGWNEGVKELAYKLRSFMELCILIPGISRSSSFSKKYHRVNQVGVSPASWKCSEEFFSRQIKNRDPLKIGFSNILALRLVRRLLNWDPEDRPSIDEALQHPYFQHPRRELFLLSFGSMCCNDIMKVNRSMLPLLRTALRRHRPNMMRMSRNGDVVSGTNVFSCPAFENSTVLKDKNLKQLCRENTGR 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00972 1155 CDD PP2Cc 74 440 IPR001932 -
Phco6g00972 1155 Pfam Protein kinase domain 819 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00972 1155 MobiDBLite consensus disorder prediction 645 665 - -
Phco6g00972 1155 SUPERFAMILY PP2C-like 66 442 IPR036457 -
Phco6g00972 1155 ProSiteProfiles Protein kinase domain profile. 618 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00972 1155 FunFam uncharacterized protein LOC106771884 isoform X8 809 1072 - -
Phco6g00972 1155 Gene3D - 63 447 IPR036457 -
Phco6g00972 1155 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Phco6g00972 1155 PANTHER PROTEIN PHOSPHATASE 64 439 IPR015655 GO:0004722|GO:0006470
Phco6g00972 1155 Pfam Protein phosphatase 2C 158 433 IPR001932 -
Phco6g00972 1155 ProSiteProfiles PPM-type phosphatase domain profile. 67 440 IPR001932 -
Phco6g00972 1155 SUPERFAMILY Protein kinase-like (PK-like) 617 1077 IPR011009 -
Phco6g00972 1155 Gene3D Transferase(Phosphotransferase) domain 1 810 1072 - -
Phco6g00972 1155 SMART PP2C_4 59 438 IPR001932 -
Phco6g00972 1155 SMART serkin_6 618 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00972 Phco-Chr6 9486535 9504458 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Phco6g00972 Pkinase 2.5e-25 CL0016