Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00966 ATGGAACAGTATGAAATTCTAGAACAGATTGGAAGAGGCTCCTTTGCTTCTGCTCTACTTGTCAGACACAGGCACGAAAACAAAAGGTATGTTCTTAAGAAGATCCGGCTTGCTCGCCAGACGGACAGAATACGCAGATCTGCTCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAACCCATTTATCGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGACTGAAGCTATTAAAAAAGCCAATGGCGTACATTTTCCTGAAGAGAAGCTCTGTAAGTGGCTGGTTCAACTGCTGATGGCACTAGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTCGGTCTAGCTAAAATGTTGACATGCGATGATCTTGCATCCTCGGTTGTTGGGACTCCAAGTTATATGTGCCCCGAACTTCTTGCTGATATACCCTATGGCTCTAAATCAGATATCTGGTCTTTGGGATGTTGTGTGTATGAAATGGCTGCTCACAAACCAGCTTTTAAAGCTCTTGATATGCAAGCACTGATTAACAAAATAAACAAGTCATTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGGGGGCTCGTTAAGAGTATGCTGCGAAAGAATCCAGAGCTTCGGCCTAGTGCTGCAGAGTTACTAAACCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCTAGAAGAAGTACTTATCCATTCCAATGGTCTGATTCAAACTATCTAAGGAGGACTCGGTTTGTTGAGCCAGATTCTGTTTCTACTCTTTCTGGTAGAGGCAAAAGATTGTCATTCAGCAATGACAGGGCATTGAATCCTAGTATATCTGGAACTGAACTAGGTTCTGTGTGTTCTATTCAAAGAGGTCAAGGATTCTCTTCTTGTTCAAAAGAGAGACACTATGAGCTCTCTGTTGGTTGTGTCCGTGAAGAATGCAATTCTAACAAGTCAAAAGACACAAAGCCCTCAACTGTTGATATGATGCCAAGATTCAGAACAGCTAAGGAATATGCCACTCCCCGAAGGCAGACAATACCATCAAAGGCATCTCATACAGGTTCCAAGCGTGATTTACTTCCAGCATCTTCTACTCCAGGTGTTAAATTTACACCACCATCTCGCAGAGCTTCTCTTCCACTCCCTACCAAAACCATGTGTATGACCACCCCATATAGAGCTAATGTTGGTCTTCTCCGGGGCATGGACTCTCCTGATGTTTCTGTCAATGCACCGCGAATTGACAAGATCGCCGAATTCCCTCTAGCCTCTTGTCAGGATTCTCTCTTTCCTGTTTGTGGAACTTCATCAACTTCGGCTCAGTGTTCTTCTGGTTCCCCAAAGAGTGCCGACTGCTTAATCACGAAAGACAAGTGCACAATCCAAGTTGTGGACAAAGTCAGTGTCCCTTCAAGTGTACAATCCCCAAAGGGTGCTGCTCCAGTTTCACATGGCAATGAATGCTCTGAGCATGCTGTTTCAAGCCTCTTCTCTGCCGAGTCTTGCCAACGCAGGTTTGACCCCTCGTCTTACCAGCAACGTGCAGAGGCATTGGAGGGTTTGCTTGAGTTCTCTGCTCGGCTCCTACAGCAACAGAGGTTTGAAGAGCTTGGAGTGTTGTTGAAGCCATTCGGTCCTGAGAAGGTTTCCCCAAGAGAGACAGCTATTTGGTTGGCTAAGAGCTTCAAAGAAACTGTTGCCTAA 1836 0.4385 MEQYEILEQIGRGSFASALLVRHRHENKRYVLKKIRLARQTDRIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKKANGVHFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYLRRTRFVEPDSVSTLSGRGKRLSFSNDRALNPSISGTELGSVCSIQRGQGFSSCSKERHYELSVGCVREECNSNKSKDTKPSTVDMMPRFRTAKEYATPRRQTIPSKASHTGSKRDLLPASSTPGVKFTPPSRRASLPLPTKTMCMTTPYRANVGLLRGMDSPDVSVNAPRIDKIAEFPLASCQDSLFPVCGTSSTSAQCSSGSPKSADCLITKDKCTIQVVDKVSVPSSVQSPKGAAPVSHGNECSEHAVSSLFSAESCQRRFDPSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00966 611 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00966 611 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 567 - -
Phco6g00966 611 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Phco6g00966 611 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Phco6g00966 611 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Phco6g00966 611 MobiDBLite consensus disorder prediction 386 426 - -
Phco6g00966 611 MobiDBLite consensus disorder prediction 388 404 - -
Phco6g00966 611 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Phco6g00966 611 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00966 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Phco6g00966 611 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00966 611 CDD STKc_Nek 3 258 - -
Phco6g00966 611 SUPERFAMILY Protein kinase-like (PK-like) 1 311 IPR011009 -
Phco6g00966 611 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00966 Phco-Chr6 9446413 9452095 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Phco6g00966 Pkinase 7.8e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00966 6 9446413 9452095 Phco6g00966 6 9446413 9452095 ECH
Phco2g01775 2 48265133 48271994 Phco6g00966 6 9446413 9452095 PCT