Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00934 ATGGCTGCACCACTAGGCAATAGGCTCCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCACTGGACTTATAGCCTCTTCTGGCAACTTTGTCCACAACAAGTGATTCTGGTTTGGGGTGATGGGTACTACAATGGGGCAATCAAGACTAGGAAGACGGTGCAACCAATGGAGGTGAGTGCTGAGGAGGCATCTCTCCAAAGAAGCCAGCAACTTAGAGAACTCTATGAATCATTGTCTGCCGGAGAGACAAATCCGCCAACTCGCCGGCCTTGCGCCGCCTTGTCACCAGAGGACCTAACAGAATCCGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCTGGTGTTGGGTTGCCTGGAAAGGCATATGCTAGGAGGCAGCATGTCTGGCTCACTGGTGCAAACGAGGTCGACAGCAAAACATTTTCACGAGCTATTCTAGCCAAGACAGTGGTGTGCATTCCTTTATTGGACGGAGTGGTTGAGTTCGGTACAACGGATAAGGTTCAAGAAGACCTTAACTTCATTCACCACGTGAAGACATTTTTCACAGACCACCACCACCCTCTGCCGCCCAAGCCAGCCCTGTCCGAGCACTCAACCTCCAACCCCATCTCCTCCTCCGACCACAACCCCGCCGTCACGTACACCGTCGCAGACCCACCCAATCCTACCCAAAACGACGAGATGGACGAAGAGGAAGAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGCGGAGTCCGCCTCTGAGGACGAAACCGGAGGCCGCATTCCCGGCCAGGTCACGACGCCGGAGATGGAGGACGTCACGGGGGCGGAGCCCAGCGAGCTGATGCAGCTGGAAATGCCGGAGGATATCCGGGTCGGATCTCCAAACGACGGATCGAACAACTTGGACTCGGACTTCCATATGCTGGCAGTTAGTCAAGGAGGGAGCGCGGCGGGGCAAGCTGAGTCGACCCTGAGATGGGGCCCGAGTCAAGGGGCATTACAAGTTCAACTACCAGCTTCAGCCCCTCATCTATTAGAAGACTTAACTCAAGAGGACAATCACTACTCTGAAACTGTAGCCAACATCCTCCAAAACCAGTCCAGCCGGTGGCCAACCTCGCCGACCACCGTTGGCTACATCACATACTCCCCGCATTCAGCTTTCGCAAAGTGGAGCAGCCGCGCCAGCCACTTCTTCCAGCCGGCGGTTGACGGCCCCAGCCAGTGGCTCCTAAAGTACATTCTCTTCACGGTCCCCTACCTACACGCCAAGAACCCCGCCGACACTTCTCCCCAAACCGCCGTCGACCCCAAGCTGCGTGGCAAGGGAACGCCGCAGGACGAGCTGAGCGCCAACCACGTGCTCGCCGAGCGCCGTCGCCGCGAGAAGCTGAACGAGAGGTTCGTAATCCTGCGGTCGCTGGTCCCCTTCGTCACGAAAATGGACAAGGCATCCATTTTGGGTGACACCATCGAGTATGTAAAGCAGCTGCGGCGGAAGATCCAGGAGCTGGAGGCGCGAAACCGCCACACTGAGGCGGAACACCGTTCCAAGGTCCCTGAGGTAACGGTTCAAAGGACGAGTAGCAATTCGAGCAAGGAGCAGCAGAGGAGTGGGGTGACGGTGATGGAGAAGAGGAAGGTGAGGATCGTGGAAGGGGTGGCTGCGAAGGCGACGGCGGTGGAGGCTGAGGCGGCAACATCAGTGCAAGTTTCGATCATTGAGAGCGATGCACTGTTGGAGATTGAGTGCCTCCACAGAGAAGGGTTGCTTCTCGACGTGATGCAGATGCTGAGGGAGGTGAGGATAGAGGTTATTGGAGTGCAATCATCACTTAACAATGGGGTGTTCATGGCGGAGTTGAGGGCTAAGGTGAAGGAACATGCGAACGGGAAGAAGGTTAGCATTGTGGAAGTGAAGAAGGCACTCAACCGAATCATTCCCCACGCTGTCCACTGA 1977 0.561 MAAPLGNRLQSMLQAAVQSVHWTYSLFWQLCPQQVILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKTVVCIPLLDGVVEFGTTDKVQEDLNFIHHVKTFFTDHHHPLPPKPALSEHSTSNPISSSDHNPAVTYTVADPPNPTQNDEMDEEEEDEEEEEEEEEEEEEEAESASEDETGGRIPGQVTTPEMEDVTGAEPSELMQLEMPEDIRVGSPNDGSNNLDSDFHMLAVSQGGSAAGQAESTLRWGPSQGALQVQLPASAPHLLEDLTQEDNHYSETVANILQNQSSRWPTSPTTVGYITYSPHSAFAKWSSRASHFFQPAVDGPSQWLLKYILFTVPYLHAKNPADTSPQTAVDPKLRGKGTPQDELSANHVLAERRRREKLNERFVILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQELEARNRHTEAEHRSKVPEVTVQRTSSNSSKEQQRSGVTVMEKRKVRIVEGVAAKATAVEAEAATSVQVSIIESDALLEIECLHREGLLLDVMQMLREVRIEVIGVQSSLNNGVFMAELRAKVKEHANGKKVSIVEVKKALNRIIPHAVH 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00934 658 MobiDBLite consensus disorder prediction 528 544 - -
Phco6g00934 658 SMART finulus 460 509 IPR011598 GO:0046983
Phco6g00934 658 Gene3D - 455 526 IPR036638 GO:0046983
Phco6g00934 658 Pfam Helix-loop-helix DNA-binding domain 457 504 IPR011598 GO:0046983
Phco6g00934 658 MobiDBLite consensus disorder prediction 193 276 - -
Phco6g00934 658 MobiDBLite consensus disorder prediction 433 460 - -
Phco6g00934 658 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 523 IPR036638 GO:0046983
Phco6g00934 658 Coils Coil 493 520 - -
Phco6g00934 658 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
Phco6g00934 658 MobiDBLite consensus disorder prediction 199 227 - -
Phco6g00934 658 PANTHER TRANSCRIPTION FACTOR TT8 7 654 - -
Phco6g00934 658 MobiDBLite consensus disorder prediction 229 258 - -
Phco6g00934 658 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 186 IPR025610 -
Phco6g00934 658 Coils Coil 226 262 - -
Phco6g00934 658 MobiDBLite consensus disorder prediction 515 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00934 Phco-Chr6 9056457 9071568 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g00934 bHLH-MYC_N 1.2e-47 CL0161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00934 6 9056457 9071568 Phco6g00934 6 9056457 9071568 ECH