Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00923 ATGATAAAATTCTATTTCCCCCCTCTTTTGTCTAACTTGCTAGTTATGGAAGAGCAAAGTAATGAAGAGAGCCCTGTGCAACTAACATCCTGTGACACTGGGGGAACAACCAATGATGTCTCTCATTCAGCTGAGGATCATATCATTCCCAACCCAAAATTTTTCATTGCAGCATCATCTGGAAGAAATGAGAGTCACTGGACTTGCTTTCCAAAACCATCTCATAACTATGTTGAGTATCTTTCAGAATCCTCAACTTATCTGCCAAACACTTCCACTGATTACATGGTAGGGGGTAGTTATCTACCTGTTGGCAACATCAATGACGGCGACTTGGTTAATGGACTGGACAGAAATTTCTTTTACAATGATCCAGGAAAAGTCTGTGCCTTTAAGCCTATTGGTTCTTCAAGTAATGACCTTGACATTAAGAAGCAGGTGGGGTTTTGGAGAGCTGATGAAGGAGAGGAGATTAAAGTCGAAACTGAAAGTAGTCAAAATTTTCTTTATGCTGAGAGTCATGCTTTATGGACAGCAGATTCTCTTGGAGATAAGCATAATGCTTTGCATGATCCAATGGTAATGGTTGGTGCACCTGCTTTACTTCCCAAATCAGGATGCAGCTCCTCAAAAGAGAAAGCACGTGTCACTGACCGTAAACGCAGGCAACGTATCGCTGATAACCTGAAAGCCTTACACGAATTGCTTCCAAATCCAGCAGAGGGAAGTCAAGCGTACATTCTGGACGATATTATTGACTATGTCAAATATTTACAGCTTCAAATAAAGGAACAAAGTGGAAGTAGATTGCAAGAGGAATCAACTGCTATACCACTAGTTTTTCATGAGGGTTACGGTCATTATATCGACCAACAGAGGCTGAATGAACCCCTCGAAGAGATAATGGGGAAACTACTTGAAGAACATTCTGCAGCAGCTGGTCAGCTACTGGAGAGTAAGGGTCTTTTCCTGCTGCCTATGGCTTTGGTTGATGATTTGAGTGAGGCTATGCAAATCTTTGGCGAGAATGCCCTGGTCTGA 1041 0.4207 MIKFYFPPLLSNLLVMEEQSNEESPVQLTSCDTGGTTNDVSHSAEDHIIPNPKFFIAASSGRNESHWTCFPKPSHNYVEYLSESSTYLPNTSTDYMVGGSYLPVGNINDGDLVNGLDRNFFYNDPGKVCAFKPIGSSSNDLDIKKQVGFWRADEGEEIKVETESSQNFLYAESHALWTADSLGDKHNALHDPMVMVGAPALLPKSGCSSSKEKARVTDRKRRQRIADNLKALHELLPNPAEGSQAYILDDIIDYVKYLQLQIKEQSGSRLQEESTAIPLVFHEGYGHYIDQQRLNEPLEEIMGKLLEEHSAAAGQLLESKGLFLLPMALVDDLSEAMQIFGENALV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00923 346 Pfam Helix-loop-helix DNA-binding domain 211 259 IPR011598 GO:0046983
Phco6g00923 346 CDD bHLH_AtbHLH_like 217 264 IPR045239 -
Phco6g00923 346 SMART finulus 215 264 IPR011598 GO:0046983
Phco6g00923 346 Gene3D - 208 277 IPR036638 GO:0046983
Phco6g00923 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
Phco6g00923 346 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 145 329 - -
Phco6g00923 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 269 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00923 Phco-Chr6 8953450 8955456 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g00923 HLH 5.8e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00923 6 8953450 8955456 Phco6g00923 6 8953450 8955456 ECH