Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00899 ATGACTCCTGTCAACCCCTTCATCCTCCTCCTCTTCTTCTTCTTCTTCCTTTCTCTCCCATCCTCTTCCTTATCCGCCACGTGTCCCCTCAACTTCACCCTCCTCGGCACCACCAAGCCCTCCTCCTTCGACTCCTCCCGCTGCCATGTCATCTCCGAGGCCCTCCGCCTTGTCCAGTCCGACTACCTCCGCCGCAGTGCCTTTTTCCTCGCTCCCTCCAACGCCTCCGACTCCTGCTGGGATAGCTTCCAGTCCTACGTTAACCGCTTCGACCCCACCTACGACATTCGCTCCTCCTGCGGCTACCTAACCTCCTGGATCTCCCAAGGCTGCGTCAACGTCACCACCAAACAAGACTTCGAAGCCCTCGTCCCCCAGTCCACGCTTCAGACCGTGGGGAAGAACTGCAACCAATCGCTCGAGAATAACTCCCCCTGCGCCCTCTGCACCTCCTCCCTCTCCGCTATCCCGCACTTGGGACAGTCCGTCGGCAACCTCACCAGCTGCACTGACTACTCTTCTATCTACGCCGCCGCCTTCGCCAACTACCTCGGCCCCTCCGACCCCGGCACCGCCAAGTGCCTGTTCTCCCTCGAATTTCCCTCCTCACGTTCCTCTGCCACCAAAAAAAGAAAGCTTCTTTTTGCGCTTGTTTCTGTTGTCTGTGTCTTGGTCTTCTCCTTGTTGGCTCTCTGCTTTTGGGCGTATCGCAAGTTTGATAAGAACGTGGCTCGGGATAGGGATATTCTTATTGCGGAAACCGGTTTGGCTTCTGGGTTGGACTCCATGGACCAGAGCACCACTTTGATCAGGTTCACTTTCGATGATATCAAGAAGGCAACTAAGAATTTCTCCCGGGATAACATAGTTGGAAGAGGGGGTTACGGGAATGTGTACAAAGGGCTGCTTCCTGATGGGAGTGAGGTCGCGTTTAAGAGGTTCAAGAATTGTTCGGCTGCTGGCGATGCCAGCTTTGCTCATGAGGTTGAGGTTATTGCTAGCGTGAGGCATGTTAACCTTGTTGCCCTGAGAGGTTATTGTTCTGTCACTACTCGTTTAGAAGGTTACCAGAGGATTATTGTTTGTGATATGGTGAAAAATGGAAGTCTCCACGACCATTTGTTTGCTTCCAATGGGGTGAAACTGAGTTGGCCAATTCGTCAGCAGATTGCTCTAGGCACCGCTAGAGGGCTGGCTTATTTGCATTATGGGGCTCAGCCTGCAATCATTCATAGGGATATTAAAGCAAGTAATATACTTTTGGATGATAAGTTTGAAGCCAAGGTTGCAGATTTTGGACTGGCGAAGTTTAACCCTGAGGGGATGACGCATATGAGCACTAGGGTGGCTGGAACCATGGGGTATGTTGCTCCGGAATATGCTTTGTATGGACAGTTGACAGAGAGAAGTGATGTGTTCAGTTATGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAGGAAGGCGCTTCAGATGAACAATGATGGCCAACCTTCTGCTTTGACTGATTGGGCTTGGTCATTAGTTAGAACAGGAAAGGCTTTGGATGTAATTGAAGATGGCATGCCACAACCTGGTTCAACACAAGTTCTTGAGAAGTATGTGTTAATTGCTGTACTTTGCTCTCACCCGCAGTTGTATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGAATCAGTGCCCTCAATACCTGAACGACCAATCCCTCTTGTTGCTGGGAGGCTTGATATTGAGAGATCTGTGAGCAGTAGTGGCTCTGGTCAGCTCTCTAGTCCAACGGGTTATCAAGCATATACTATAGAAAGTGATAGCCAGTTTACTAATTCCAGGGAAGAAAGAAGCTCGAGCTCCAGGATTTTGTGTACAGAATGA 1884 0.5037 MTPVNPFILLLFFFFFLSLPSSSLSATCPLNFTLLGTTKPSSFDSSRCHVISEALRLVQSDYLRRSAFFLAPSNASDSCWDSFQSYVNRFDPTYDIRSSCGYLTSWISQGCVNVTTKQDFEALVPQSTLQTVGKNCNQSLENNSPCALCTSSLSAIPHLGQSVGNLTSCTDYSSIYAAAFANYLGPSDPGTAKCLFSLEFPSSRSSATKKRKLLFALVSVVCVLVFSLLALCFWAYRKFDKNVARDRDILIAETGLASGLDSMDQSTTLIRFTFDDIKKATKNFSRDNIVGRGGYGNVYKGLLPDGSEVAFKRFKNCSAAGDASFAHEVEVIASVRHVNLVALRGYCSVTTRLEGYQRIIVCDMVKNGSLHDHLFASNGVKLSWPIRQQIALGTARGLAYLHYGAQPAIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGRKALQMNNDGQPSALTDWAWSLVRTGKALDVIEDGMPQPGSTQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESVPSIPERPIPLVAGRLDIERSVSSSGSGQLSSPTGYQAYTIESDSQFTNSREERSSSSRILCTE 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00899 627 Gene3D Transferase(Phosphotransferase) domain 1 365 566 - -
Phco6g00899 627 SMART serkin_6 284 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00899 627 Gene3D Phosphorylase Kinase; domain 1 255 363 - -
Phco6g00899 627 Pfam SPARK 24 162 IPR043891 -
Phco6g00899 627 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 365 566 - -
Phco6g00899 627 ProSiteProfiles Protein kinase domain profile. 284 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00899 627 Pfam Protein kinase domain 285 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00899 627 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Phco6g00899 627 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 246 363 - -
Phco6g00899 627 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 114 613 - -
Phco6g00899 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
Phco6g00899 627 CDD STKc_IRAK 290 559 - -
Phco6g00899 627 MobiDBLite consensus disorder prediction 606 627 - -
Phco6g00899 627 SUPERFAMILY Protein kinase-like (PK-like) 266 571 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00899 Phco-Chr6 8742013 8743896 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Phco6g00899 Pkinase 5.4e-41 CL0016