Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00898 ATGAAGGACAAGGTGGATTCCCCAGTTACAGTTCTGGAGGACTATTTCAGGAGCTCAGATTCAGAATCAAGTTCTTCCAAAGAGCCTGCAGTGGATTCTGAGTCTCAAGACCTTTCAAAACCTGCTTCTAGGTGGCACGCATTTCTTCAGTTGTTTAGGAGTGGGTCCAAGAAACAGATGAACACGTTGCACCCTCTCAGTGCCATCAAGCTCTCCAAAAGAATGAGCACTAGCATGAGGGAGACCATTCTCCCAAGTTGTTTCTTGGATGCAAATGCATCCCCTTGCAGGTCACCGTGGAAGATCTTTACTCATCATGAGATTCAGGTTGCAACCAATTCATTTAGCCAAGAAAATTTGATTGGGAAAGGTGGCTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTGGCAATTAAACGTTTAACAAGAGGAACAGCTGATGAAATCATAGGGGATTTCTTATCAGAACTTGGTGTAATGGCGCATGTAAACCATCCCAATACTGCTAAACTGGTTGGCTATGGAGTGGATGGTGGAATGTATCTAGTTCTTGAGTTGTCTGAAAAAGGGAGCCTAGCTTCAGTTCTTTATGGTTCCAAGGAGAAACTACCATGGTGTACAAGGCACAAAATTGCATTAGGAATAGCTAATGGTATACTATATCTTCATGAGGGTTGCCAAAGAAGAATTATCCACAGGGATATAAAAGCTGCCAATATCTTGCTCACGGAGGACTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGCTGCCAGAAAATTGGACTCACCACACCGTCTCAAAATTTGAAGGAACTTTCGGCTACCTTGCACCTGAATACTTGCTGCATGGCATAGTGGACGAGAAAACGGACATATTTGCCTTTGGTGTGTTGCTATTGGAATTAGTGAGTGGGCGTCGAGCACTAGATTATTCACAGCAAAGCCTTGTGTTGTGGGCAAAGCCGTTGCTGAAAAAAAATGATATTATGGAGCTGATTGATCCTTCACTAGCAGGTAACTTCGACTCGAGGCAAATGAATCTTATGCTCTTAGCTGCTTCTTTGTGCATACAACAGTCCTCTATTCGTCGCCCCTCTACAAGACAGGTTGTACAGCTTCTGAACGGTAACCTTAGCTGCTTTAAGGGCATGAAGAAAACCCGAATGCCATTCTTCAGAAGAGTCTTCCGAGAAGAACTTCATGATTCCGAATAG 1233 0.4371 MKDKVDSPVTVLEDYFRSSDSESSSSKEPAVDSESQDLSKPASRWHAFLQLFRSGSKKQMNTLHPLSAIKLSKRMSTSMRETILPSCFLDANASPCRSPWKIFTHHEIQVATNSFSQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLPWCTRHKIALGIANGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDIFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKNDIMELIDPSLAGNFDSRQMNLMLLAASLCIQQSSIRRPSTRQVVQLLNGNLSCFKGMKKTRMPFFRRVFREELHDSE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00898 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Phco6g00898 410 MobiDBLite consensus disorder prediction 14 38 - -
Phco6g00898 410 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 192 394 - -
Phco6g00898 410 Pfam Protein kinase domain 116 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00898 410 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Phco6g00898 410 MobiDBLite consensus disorder prediction 1 38 - -
Phco6g00898 410 Gene3D Phosphorylase Kinase; domain 1 90 189 - -
Phco6g00898 410 ProSiteProfiles Protein kinase domain profile. 115 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00898 410 Gene3D Transferase(Phosphotransferase) domain 1 192 394 - -
Phco6g00898 410 SMART serkin_6 115 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00898 410 PANTHER OS08G0249100 PROTEIN 6 405 IPR046958 -
Phco6g00898 410 SUPERFAMILY Protein kinase-like (PK-like) 96 380 IPR011009 -
Phco6g00898 410 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 86 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00898 Phco-Chr6 8727894 8730630 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Phco6g00898 Pkinase 5e-42 CL0016