Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00875 ATGTCGTTTAGGAGTATCATCGTGGAGAGGAAGGGATTTGAGTTTAAGTTTGGGTATAGTATGAGATCCAGGTCACAGTCACACAGTGATGCCATTGTCCAGGATCGTTTGGCGGTGCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCACCTGAGCTTTTGAGGGATGTGCTCATGAGGATTGAGGCCTCTGAGGATTCCTGGCCTGCCCGAACACACGTAGTCGCCTGTGCCGGAGTGTGCCGCAGTTGGAGAGAAATCATGAAGGAAATTGTCAAATCCCCTCAAGTATCTGGCAAGTTGACATTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAGTGCTATATTAAACGAAATCACAGTAATAAAACATATTATCTATTTCTTGGTTTAAACCAAGCCTCAACTGAGGATGGCAAGTTCCTTCTTTCTGCACGCAAGTGTCGACGTGCAACTCACACTGACTATATCATTTCTCTTAACTGTGATGATGTGTCAAGAGGGAGTAATACCTATATTGGGAAGTTGAGATCAAACTTTTTGGGCACCAAATTCACTGTGTATGATGCACACCCTCCAATTTATGGAGCCAAAGTCACAAAGTCTCGTTCCACCAGGCTAGTCAGTCTCAAGCAAGTTTCTCCCAGAGTTCCTGCTGGCAACTACCCCATTGCTCATGTCTCGTATGATCTGAATGTTTTGGGCTCAAGAGGCCCTAGAATAATGCACTGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCCATCCCTTTCTTCAGATCAAAATCAACCCGCATGGATAGTCTCACGTCAGTGCCTTTGACTTGTCAAAATGAGGGGATGCTGGTACTGCAAAACAAGTCCCCCAGTTAA 957 0.4608 MSFRSIIVERKGFEFKFGYSMRSRSQSHSDAIVQDRLAVLDGLKQSCWANMPPELLRDVLMRIEASEDSWPARTHVVACAGVCRSWREIMKEIVKSPQVSGKLTFPISLKQPGPRDSLLQCYIKRNHSNKTYYLFLGLNQASTEDGKFLLSARKCRRATHTDYIISLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAHPPIYGAKVTKSRSTRLVSLKQVSPRVPAGNYPIAHVSYDLNVLGSRGPRIMHCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDSLTSVPLTCQNEGMLVLQNKSPS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00875 318 CDD F-box_AtTLP-like 48 92 - -
Phco6g00875 318 Gene3D Tubby Protein; Chain A 108 318 IPR025659 -
Phco6g00875 318 PANTHER TUBBY-RELATED 30 317 - -
Phco6g00875 318 SUPERFAMILY Tubby C-terminal domain-like 97 317 IPR025659 -
Phco6g00875 318 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Phco6g00875 318 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Phco6g00875 318 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Phco6g00875 318 PRINTS Tubby superfamily signature 312 318 IPR000007 -
Phco6g00875 318 SUPERFAMILY F-box domain 42 91 IPR036047 GO:0005515
Phco6g00875 318 Pfam Tub family 109 318 IPR000007 -
Phco6g00875 318 Pfam F-box domain 48 94 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00875 Phco-Chr6 8534155 8536912 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phco6g00875 Tub 2.9e-57 CL0395