Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00872 ATGAGTGCTTATCCCAATCAAAGACAGAGGACATGCGACTATTGTGGGGACTTCAAAGCTCTTCTATATTGCAGAGCTGATTCTGCAAAATTATGTTTCTTCTGTGACCGAAAAATTCACTTCCCCAACCAGCTTTTCTCCAAGCACTCGCGCACTCACCTCTGTGATGGCTGTGGCGATTCCCCTGCATCAGTCCTCTGTTATTCTGAGAACTCTGTTTTCTGCCACAACTGTGACTGCCAAAACCATAACAACCGCATGCTGTCTCAGGAACACCAACGGAGACCCCTTGAGGGGTTCTCTGGGTGCCCTTCTGTGACTCAGATGTTAATGATTTTGGATCTTACTGAAAAATCTCTGCTTTCAACCGAGGGGAGAAGTTCCCATGATGATGGCCTTTCCGAATTGCACGTGTGGAATGCTCCTTCTGTTTTTGGTTTTGAGGATTTGATTGCTTCCTCTTCTTATAAGAATCATAAGGGTGCGTGCGGGAGACAGAAAGAAGAAATTCTGAGTCAGCTTCGTGAACTAGTAAAGTTGGAGCCTGACTTGACTCATGGAGAAGTAGAAGCTGAACCACAACTGCAGTTTGAAAATTTGTCTACTGGTTTTGAACGTGACATAGAGGCTAACATGTTTCCTTCATATGAGGCAGGTGTGTTTTGTTGGCATGGAGAAAGCAGTGATCGTGCAAATCAAATTGTTCCTTCTGATACGTCAGTGAGTGATTATAGCGAGCTAGCTTCAGCTAAAGATCCAAGTTTTACAATCCCTGCAACTCACACGTATTGTAACAACCAAGGAAAACCATCAAATTATTTTAAGGCTGAAAACTTGTCTCCTACTCCTAAAGCTACTCCTTATGAGTTAACAAGTCATGAAAGAGATTCAGCATTATTGCGTTACAGAGAGAAGAAGAAAACAAGAAGGTATGACAAGCACATCAGATACGAATCACGAAAAGTTCGGGCAGAAAGCAGGATGAGAGTTAAGGGTCGGTTTGTGAAAGATGAAACACAGAAATAA 1026 0.4288 MSAYPNQRQRTCDYCGDFKALLYCRADSAKLCFFCDRKIHFPNQLFSKHSRTHLCDGCGDSPASVLCYSENSVFCHNCDCQNHNNRMLSQEHQRRPLEGFSGCPSVTQMLMILDLTEKSLLSTEGRSSHDDGLSELHVWNAPSVFGFEDLIASSSYKNHKGACGRQKEEILSQLRELVKLEPDLTHGEVEAEPQLQFENLSTGFERDIEANMFPSYEAGVFCWHGESSDRANQIVPSDTSVSDYSELASAKDPSFTIPATHTYCNNQGKPSNYFKAENLSPTPKATPYELTSHERDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRVKGRFVKDETQK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00872 341 Pfam CCT motif 295 337 IPR010402 GO:0005515
Phco6g00872 341 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Phco6g00872 341 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 11 337 - -
Phco6g00872 341 CDD Bbox1_BBX-like 12 54 - -
Phco6g00872 341 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515
Phco6g00872 341 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Phco6g00872 341 SMART bboxneu5 7 54 IPR000315 GO:0008270
Phco6g00872 341 SMART bboxneu5 55 97 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00872 Phco-Chr6 8499924 8502292 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco6g00872 CCT 2e-16 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00872 6 8499924 8502292 Phco6g00872 6 8499924 8502292 ECH
Phco2g02331 2 53767432 53770616 Phco6g00872 6 8499924 8502292 PCT