Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00865 ATGCAAATTTGTGGAGGAGTTGAATTGAAATACATAAAAGTTGTAAACAAGGTTCTTCTAACTGGAACTCCTCTTCAGAATAACCTGGCCGAATTATGGTCTCTATTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGCGAAGGGCAATAATGAAGCAACCAAGGAAGAACTGGAAGAGAAACGGAGATCCCAAGTAGTAGCAAAGCTTCATGCTATTCTTCGACCCTTTCTTCTGCGTAGGATGAAGTCTGATGTTGAGATTATATCTGTATCGCATTACTTTACTGCAGGACTCCCTGTTCCTGGAGGTACGATTCGTAATTTGGTTATTCAGATTAGGAAAATGTTTAACCATCCTGATCTTCTAGAATCAGCTTATGATGATACATCTTGCTATCCTCCCTTAAATGAGATAGTTGAACAGTGTGGAAAATTCCATTTGCTTGATCGATTGGTGCAACGTTTATTTGCAAGGGAATCACAAAGTATGCTTCACAGTGCTGTTCTTGTCTTCAGTCAATGGACTAAACTGTTGGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCTGTGAGACTGGATGAGAGGAAACGACAGATCGAGGACTTCAACGATGCAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATCAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAAGCCATGGATAGGTGTCATAGAATTGGTCAAACAAAGCCTGTTCATGTCTACCGGCTCTCAACTGCTCAATCTATAGAGGATCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTAGTGATTGGGAAAGGACAGTTTCATCAAGAACGTACAAAAACTGTCAATAGGGATGAGATGGAGAAGGATGTTTTGGCATTCCTTCGTGACGAAGAAACAGCCGAAGATAAAATGATTCGAACAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGTGATCTTATTATCGTCAACAACTCAGACGATGATAACTCTAAACCTCCATGCAGTACCATTCCTCTTAAGGGCCAGGGTGGGAGGTGGTGA 1179 0.4054 MQICGGVELKYIKVVNKVLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSAKGNNEATKEELEEKRRSQVVAKLHAILRPFLLRRMKSDVEIISVSHYFTAGLPVPGGTIRNLVIQIRKMFNHPDLLESAYDDTSCYPPLNEIVEQCGKFHLLDRLVQRLFARESQSMLHSAVLVFSQWTKLLDIMDYYFSEKGFEVCRIDGSVRLDERKRQIEDFNDANSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEDRMLKRAFSKLKLEHVVIGKGQFHQERTKTVNRDEMEKDVLAFLRDEETAEDKMIRTDISDEDLEKLLDRSDLIIVNNSDDDNSKPPCSTIPLKGQGGRW 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00865 392 CDD SF2_C_SNF 145 285 - -
Phco6g00865 392 Gene3D - 92 374 IPR027417 -
Phco6g00865 392 MobiDBLite consensus disorder prediction 370 392 - -
Phco6g00865 392 Pfam SNF2-related domain 11 98 IPR000330 GO:0005524|GO:0140658
Phco6g00865 392 PANTHER SNF2/RAD54 HELICASE FAMILY 116 336 - -
Phco6g00865 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 92 IPR027417 -
Phco6g00865 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 357 IPR027417 -
Phco6g00865 392 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 159 328 IPR001650 -
Phco6g00865 392 Gene3D - 7 91 IPR038718 -
Phco6g00865 392 SMART helicmild6 191 275 IPR001650 -
Phco6g00865 392 Pfam Helicase conserved C-terminal domain 175 275 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00865 Phco-Chr6 8430919 8434289 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco6g00865 Helicase_C 1.4e-18 CL0023