Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00855 ATGGACTTGTACGGTCGGGGCCCCGTCAGGAATGGATCCAACCCGCTCAACCAACCCGAATGGCCCTCACCGGGCATCGACACTGCTCTCGAAGAATCCATGTGGCATTTAACGCTCGGTGGAGGTGAATCTTACCCGGAGCGGCCCGGCGTTCCCAATTGTGTGTATTACATGCGAACCGGTGTGTGCGGATATGGTAGCAGGTGTCGTTACAACCACCCTCGTGATCGTGCTGCGGTTGCTGCGGCAGTAAGAGCTACTGGGGAGTACCCAGAACGGGTGGGGGAACCTCCATGCCAGTATTATTTAAAGACTGGAACCTGTAAATTTGGAGCATCATGTAAATTCCACCATCCAAAAAATGGCGGTGGATATTTAAGTCAAGCTCCACTAAATACTTGTGGATACCCATTACGGCCGGGTGAGAAAGAGTGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTGTTACTTGTAAATTCCATCATCCTCAACCTTCTGGCACACCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTGCCGTTCCTGTGCCTGAACAGTATGGAGGAGCTTCCGCAAACTTGAGAGTGGCCAGGCCTCCTGTATTGTCTGGTTCATATGTCCAAGGGGCTTATGGTCCTGTACTTCTTTCTCCAGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGTGCTCAAACTGCTGTTGGGGCCACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGTTGTCCTCTACTACCGGTCCTTCAGGAAACATACTAAAGGATCAATTATTTCCTGAAAGACCCGGTGAACCTGAATGCCAATATTTTCTGAGGACAGGGGACTGTAAATTTGGACTAGCTTGTCGATATCATCATCCTCGAGACCATATTGTTGCACGGCCATTTCTTAGCCCAATTGGACTTCCTTTACGTCCGGGCGTACAACCTTGCGCTTTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTCCACGTGCAAATTTGACCATCCTTTGGGATCTTTGAGCTACAGTCCATCGGTATCTTCTTTCATTGATGTGCCAGTTACTCCATACCCAGTGGGGTCTTTGCTGTCTCAGCTGGCTCCTTCAACATCTTCAGAGCTTCGGCCTGAACTGATGTCCGGGTCCAAAAAGGAATCCCTTTCAGCCAGAATACCTTCTTCTGGTACTTCTGTCGGTCTAATTTTCTCACAAGGTGGTTCTATCTCGTTATCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCCCTCTTGGCAGTAGCAGAAGTACCAGACAAAGCGGTGAGATACGTTGA 1401 0.4875 MDLYGRGPVRNGSNPLNQPEWPSPGIDTALEESMWHLTLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNTCGYPLRPGEKECSYYLKTGQCKFGVTCKFHHPQPSGTPLPASAPQFYQQVQSPAVPVPEQYGGASANLRVARPPVLSGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVLSPGAQTAVGATSLYGVTQLSSPTSAFARPYTPLSSTTGPSGNILKDQLFPERPGEPECQYFLRTGDCKFGLACRYHHPRDHIVARPFLSPIGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSLSYSPSVSSFIDVPVTPYPVGSLLSQLAPSTSSELRPELMSGSKKESLSARIPSSGTSVGLIFSQGGSISLSDVQLSSQSSAPLGSSRSTRQSGEIR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00855 466 SUPERFAMILY CCCH zinc finger 342 370 IPR036855 GO:0046872
Phco6g00855 466 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Phco6g00855 466 Gene3D - 295 377 - -
Phco6g00855 466 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Phco6g00855 466 MobiDBLite consensus disorder prediction 443 466 - -
Phco6g00855 466 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Phco6g00855 466 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Phco6g00855 466 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Phco6g00855 466 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Phco6g00855 466 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Phco6g00855 466 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Phco6g00855 466 MobiDBLite consensus disorder prediction 404 423 - -
Phco6g00855 466 FunFam Zinc finger nuclease 2 47 124 - -
Phco6g00855 466 Gene3D - 43 122 - -
Phco6g00855 466 PANTHER PROTEIN PHOSPHATASE RELATED 42 388 - -
Phco6g00855 466 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Phco6g00855 466 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Phco6g00855 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Phco6g00855 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Phco6g00855 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Phco6g00855 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Phco6g00855 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Phco6g00855 466 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Phco6g00855 466 SUPERFAMILY CCCH zinc finger 301 324 IPR036855 GO:0046872
Phco6g00855 466 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Phco6g00855 466 MobiDBLite consensus disorder prediction 1 25 - -
Phco6g00855 466 Gene3D - 127 171 - -
Phco6g00855 466 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00855 Phco-Chr6 8363051 8366587 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco6g00855 zf-CCCH 1e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00855 6 8363051 8366587 Phco6g00855 6 8363051 8366587 ECH