Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00852 ATGTCAAATATTTCAGGTGATGAAGGAAGTTTCTCCTCAGCAAACACTGTGGAAGAAGTTCATCAAGAAAGCCAGCAGCAGCAACCTCAAAACCGGCATGGCTCAAGGTCTGGTGCTTGCAACACCAATAGCTCAACTTATCAACAGCAGCAGCAACAGTCAACCAAGAAGAAAAGAAACCTACCTGGAACCCCAGATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTTTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGACCAAGCAATGAGGTGAAGAAACGGGTTTATGTGTGCCCTGAGCCCTCATGCGTCCACCACAACCCAGCTCGAGCATTAGGAGACCTCACTGGCATAAAAAAGCATTACAGCAGAAAACATGGTGAAAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAATCTGATTGGAAGGCACACCAGAAAACCTGTGGCACCAGGGAATACAAATGTGATTGTGGGACCATATTTGCCAGAAGAGACAGCTTTATCACACACAGGGCCTTTTGTGACGCATTAACCGAAGAAAACAATCGAGTAAACCCTTCATTAACCACTGGGGCTAGCATGACACCAAGCTTGCAAAATGAACTGCAAGACCTCATGGCCACAATGCCTCTATGCACTAGTCCCAACAACGCAGTACCCGAATTCAACAACAACTACGACCCTAGTAAGAGCCCACTCAAAACCCTATCCCAAGAACATCTTGTCCCAATGCCATTCAAGTCCATGAGCATGAGGGGTTGCATGTCCTCTACCACTTCAGGTACACTCTTTGGTGGTCCAAAAAATATCTCACTTCCCTCATCTTCCACCCTTCAACTCAGCACCAACAACTCACATACCTTCAATTACTTCCAAGACAGCAAAAACGCTGCTGCATCAGCTCACATGTCTGCCACAGCTTTATTACAGAAAGCAGCCCAGATGGGTGCTGCTGCAAGCAATAATAGCATTAACTCTCCCACCATGATGCAGAAAAGCTTTGTTAGTGGCATGACTGGTCCTGACCCCGACCATAATCCTTCTTCCTATGACCCCTTCCATCATCCACACTCTGGTGATCAATCTCACATGGCTGGGATTAGTGGTGCTGGAGCCTTCAACAACCAATTTTTTCACAAGGGGCAGCAAGAGATATCAGTAATACTTGATTCCAACACTAGTGATATGGGAATTTTCGGTGCAATGTTCATGGGAAATGACCACAACCAAGGCGTGATGAAGGACATGGAGCAAGAGGTTGGTGCTAGTCGTTCAAGTTTGATTCATAGAAGAGATGTATCAGAAGGAAACCCAATGGGGGCTTCAAGGTTTGGAGGTGGTGACATGACAACGGTCCATGATTTCTTGGGTGTTGGGGGTGCAACTTCAAGGACAGGAAGTTTGCATGAAGCACAGAAACAACAACAGCAAAGTATGGAGTTAGAGGCATTAACCCACCAGAGGTTACAAATGATTAATCACTTTCACCACCACCTTCCACTTGGGGATTCTGCTATGGAGAAGTCCATTTGGGACATTTGA 1647 0.4566 MSNISGDEGSFSSANTVEEVHQESQQQQPQNRHGSRSGACNTNSSTYQQQQQQSTKKKRNLPGTPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRPSNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFARRDSFITHRAFCDALTEENNRVNPSLTTGASMTPSLQNELQDLMATMPLCTSPNNAVPEFNNNYDPSKSPLKTLSQEHLVPMPFKSMSMRGCMSSTTSGTLFGGPKNISLPSSSTLQLSTNNSHTFNYFQDSKNAAASAHMSATALLQKAAQMGAAASNNSINSPTMMQKSFVSGMTGPDPDHNPSSYDPFHHPHSGDQSHMAGISGAGAFNNQFFHKGQQEISVILDSNTSDMGIFGAMFMGNDHNQGVMKDMEQEVGASRSSLIHRRDVSEGNPMGASRFGGGDMTTVHDFLGVGGATSRTGSLHEAQKQQQQSMELEALTHQRLQMINHFHHHLPLGDSAMEKSIWDI 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00852 548 Gene3D Classic Zinc Finger 140 219 - -
Phco6g00852 548 MobiDBLite consensus disorder prediction 372 401 - -
Phco6g00852 548 MobiDBLite consensus disorder prediction 1 61 - -
Phco6g00852 548 SMART c2h2final6 126 156 IPR013087 -
Phco6g00852 548 SMART c2h2final6 85 107 IPR013087 -
Phco6g00852 548 SMART c2h2final6 161 181 IPR013087 -
Phco6g00852 548 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Phco6g00852 548 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
Phco6g00852 548 Pfam Zinc-finger of C2H2 type 85 107 - -
Phco6g00852 548 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Phco6g00852 548 Gene3D Classic Zinc Finger 62 130 - -
Phco6g00852 548 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Phco6g00852 548 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 513 IPR031140 -
Phco6g00852 548 MobiDBLite consensus disorder prediction 1 70 - -
Phco6g00852 548 FunFam protein indeterminate-domain 12-like 64 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00852 Phco-Chr6 8344482 8347733 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g00852 zf-C2H2 0.0056 CL0361