Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00851 ATGGGTGACAACATCAACATTGGCAAAGTCTTAGACAGAGAAGGCTTTAAGTACAACTTCACATCTTCAACTGCAACTGCAAGTGACACCTCTGAACAAGATGGGGTCATTAAGGAGCAGGATCGGTTGCTTCCAATAGCTAATGTGGGGAGAATCATGAAGCAAACTCTTCCTCCCAATGCCAAGATCTCAAAAGAAGCTAGAGAAACCATGCAGGAATGTGTGTCCGAGTTCATTAGCTTTGTCACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAAACCGTAAATGGTGACGATATTTGCTGGGCCTTGGCTACCCTAGGGTTTGATGACTACGCTGAGCCTCTTAAAAGGTACTTGCATAAGTATAGGGAGCTGGAGGGTGAGAGAGCAAACCAAAATAAGGGTAACAGTTATGAAAACAACATTTCAAACATATAA 450 0.4378 MGDNINIGKVLDREGFKYNFTSSTATASDTSEQDGVIKEQDRLLPIANVGRIMKQTLPPNAKISKEARETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKYRELEGERANQNKGNSYENNISNI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00851 149 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Phco6g00851 149 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Phco6g00851 149 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Phco6g00851 149 SUPERFAMILY Histone-fold 40 140 IPR009072 GO:0046982
Phco6g00851 149 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco6g00851 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
Phco6g00851 149 Gene3D Histone, subunit A 30 147 IPR009072 GO:0046982
Phco6g00851 149 FunFam Nuclear transcription factor Y subunit B-3 32 148 - -
Phco6g00851 149 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00851 Phco-Chr6 8330106 8330555 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco6g00851 CBFD_NFYB_HMF 9.2e-28 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00851 6 8330106 8330555 Phco6g00851 6 8330106 8330555 ECH