Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00832 ATGCGTCCATTTCCCGCGCCAATAACAAATCACATCACATCACTCAGGGTTCCGCCCACCATGGCCGATGCTCCCGCGAGTCCAGGCGGCGGAGGTAGCCACGAGAGCGGCGACCACAGTCCCCGCTCCAATTTCCGCGAGCAGGACCGCTTCCTCCCCATCGCCAACATCAGCCGCATCATGAAGAAAGCGCTTCCCGCCAACGGCAAAATCGCCAAGGACGCCAAAGAAACCGTGCAAGAATGTGTATCCGAGTTCATCAGCTTCATCACCAGCGAAGCTAGCGATAAGTGCCAGAGAGAGAAGAGAAAGACCATTAACGGCGACGATTTGCTTTGGGCTATGGCCACTTTAGGTTTCGAGGAATATGTTGATCCGCTTAAGATTTACCTCGCCTCTTACAGAGAGATTGAGGGTGATTCGAAGGGTTCGGCCAAGGGTGGAGAGACATCTTCTAAGAGAGATGTTTATCCCAATTCTAATGTCCAGGTGGAGAATCTTGCTCATCAAGGTTCTTTCTCACAAGGTGTTAACTACACGAATTCCCAGCCCCAGGGTCCACATATGATAGTTCCCATGCAAGGCCAAGAGTAG 594 0.5219 MRPFPAPITNHITSLRVPPTMADAPASPGGGGSHESGDHSPRSNFREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYVDPLKIYLASYREIEGDSKGSAKGGETSSKRDVYPNSNVQVENLAHQGSFSQGVNYTNSQPQGPHMIVPMQGQE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00832 197 Gene3D Histone, subunit A 38 173 IPR009072 GO:0046982
Phco6g00832 197 MobiDBLite consensus disorder prediction 139 161 - -
Phco6g00832 197 SUPERFAMILY Histone-fold 48 151 IPR009072 GO:0046982
Phco6g00832 197 MobiDBLite consensus disorder prediction 173 197 - -
Phco6g00832 197 FunFam Nuclear transcription factor Y subunit B-3 40 164 - -
Phco6g00832 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 115 IPR003958 -
Phco6g00832 197 ProSitePatterns NF-YB/HAP3 subunit signature. 82 98 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco6g00832 197 MobiDBLite consensus disorder prediction 1 48 - -
Phco6g00832 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 37 169 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco6g00832 197 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Phco6g00832 197 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Phco6g00832 197 PRINTS CCAAT-binding transcription factor subunit A signature 117 135 - -
Phco6g00832 197 MobiDBLite consensus disorder prediction 173 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00832 Phco-Chr6 8200928 8203694 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco6g00832 CBFD_NFYB_HMF 1e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00832 6 8200928 8203694 Phco6g00832 6 8200928 8203694 ECH
Phco11g01627 11 12513955 12516021 Phco6g00832 6 8200928 8203694 ECH
Phco3g00464 3 3458664 3460752 Phco6g00832 6 8200928 8203694 ECH
Phco2g02000 2 50699482 50704498 Phco6g00832 6 8200928 8203694 PCT