Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00829 ATGAACTCCAACACTTCCATTTCTCAGTCATTGGCGGCGGCGGCGAGTGATGCTTCGGGGAAGAAGGTCAGAAAGCCTTACACCATAACCAAGTCAAGGGAGAGTTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGGGATTGGAAAAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCTCAGAAATACTTCTTGAAAGTTCAAAAGAATGGGACTGTGGCACACGTGCCTCCTCCCCGTCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAAGCATCAAAAAATGTTTTGGTGCCATTGCCAGCTTCCATTGGTTATGCTTCTTCAACAAATATGCTTGCACACGGGTTTGCCGCATGGGATGAAACCTCCTTGCTGATTAATACAGGAGCCAGTAAATCCTTGACCTGTCAGGATGAACCCAACAATCTTTGTGGAAATGAAGCTGATATTGGATCAAAGGGGATAACAGAGATTACCAACAGCACTCTTAGTGGTGTTAGAAATTCTACTAGATCGCTACCGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCGGTTCTTCATGGTTTGCCTGATTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTATTTGATCCAGATACAAATGACCATGTCCAAAGGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTATTGTTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGACTTTGAACCCATTAAGGAGGCACTGTCAACAAATGATGTGAATGGAATGGAAGTAGGAGTTGCTGCAGGAATTGATGTGAAGAAGCACACAAATGATCTATCATGTCAAACTGCTTAA 891 0.4242 MNSNTSISQSLAAAASDASGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIGYASSTNMLAHGFAAWDETSLLINTGASKSLTCQDEPNNLCGNEADIGSKGITEITNSTLSGVRNSTRSLPTSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPDTNDHVQRLKEMDPINFETVLLLMRNLTVNLSSPDFEPIKEALSTNDVNGMEVGVAAGIDVKKHTNDLSCQTA 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00829 296 MobiDBLite consensus disorder prediction 1 15 - -
Phco6g00829 296 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Phco6g00829 296 SMART sant 32 80 IPR001005 -
Phco6g00829 296 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Phco6g00829 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 31 80 IPR006447 GO:0003677
Phco6g00829 296 Gene3D - 36 83 - -
Phco6g00829 296 ProSiteProfiles SANT domain profile. 31 84 IPR017884 -
Phco6g00829 296 PANTHER SWI/SNF COMPLEX-RELATED 8 255 - -
Phco6g00829 296 CDD SANT 35 78 IPR001005 -
Phco6g00829 296 MobiDBLite consensus disorder prediction 1 33 - -
Phco6g00829 296 FunFam protein REVEILLE 6 isoform X1 35 83 - -
Phco6g00829 296 Pfam Myb-like DNA-binding domain 33 78 IPR001005 -
Phco6g00829 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 82 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00829 Phco-Chr6 8171971 8178140 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco6g00829 Myb_DNA-binding 4.3e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00829 6 8171971 8178140 Phco6g00829 6 8171971 8178140 ECH
Phco2g01995 2 50640882 50642794 Phco6g00829 6 8171971 8178140 PCT