Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00827 ATGCCGCCGAAGCAGCAATCCAAAGCTGATTTAGCGAAGAAGCAGAAGGTTGTAGAGGACAAAACCTTCGGTCTCAAGAACAAAAACAAGAGCAAAAATGTTCAGAAGTATGTCCAGAACCTTAAGCAATCAGTGCAGCCCAGGGTCGATCCCGCCAAAGTCGATGCCAAGAAAAAGAAGGAGGAAGAGAAAGCCAAGGAGAAGGAGTTAAATGATTTGTTCAAAATCGCTGTTACTCAGCCTAAAGTGCCAGTTGGTGTTGATCCCAAGTCTATATTGTGTGAGTTTTTTAAAGTGGGGCAGTGTGCCAAAGGCTTCAAGTGCAAGTTTTCGCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGATAAGCGTGACCAGGACACAATGGAGGACTGGGATCAAGAGACCTTGGAGAAGGTGGTGGAGTCGAAGAAAGATGATTATAATCATAATAAACCAACTGACATTGTATGCAAGCACTTTTTGGATGCCGTAGAAAAGAAGCAATACGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAGGAATTGCCATTATAGACATGCTCTTCCACCTGGTTATGTTTTGAAATCCCAAATGAAGGCTTTGTTAGAGGAAGAAGCTAACAAAATATCAATCGAGGAGGATATTGAAAATCAGCGTGCCAAAGTGAAAACTACGACTCCTATGACTCCTGACTTATTCTATGAATGGAAGAAGAAGAAGATAGAAGAAAGAGATGCCAATTTAGCTGCACAGCAAGCAGAGAGGGCTAAGAATGACCGTATGAGTGGTCGGGAGCTATTTTTGTCAAATGCTAGCTTGTTTGTGGACGATGCAGAAGCATATGAAAAATACCAGAGAGAGCCAGATAATGATCAAACTGAACAGAATGGTAATGGGAACGCTGCCCAAGATGGTCCAAGCACCTCAGCTGGTGCTGATAGTGAAACTCTTGATGACATAGATGACGACGACGACGAGTTGGACATGGATGAGTTAAATGAATTGGAAGCAAGCTTAGCCAAGACATCAATCCAAATAAAGGAAACGGGAGCTGAAGCCTAG 1083 0.4303 MPPKQQSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPRVDPAKVDAKKKKEEEKAKEKELNDLFKIAVTQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDQDTMEDWDQETLEKVVESKKDDYNHNKPTDIVCKHFLDAVEKKQYGWFWVCPNGGRNCHYRHALPPGYVLKSQMKALLEEEANKISIEEDIENQRAKVKTTTPMTPDLFYEWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSNASLFVDDAEAYEKYQREPDNDQTEQNGNGNAAQDGPSTSAGADSETLDDIDDDDDELDMDELNELEASLAKTSIQIKETGAEA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00827 360 MobiDBLite consensus disorder prediction 40 63 - -
Phco6g00827 360 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Phco6g00827 360 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Phco6g00827 360 MobiDBLite consensus disorder prediction 298 321 - -
Phco6g00827 360 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Phco6g00827 360 Pfam DRG Family Regulatory Proteins, Tma46 215 297 IPR032378 -
Phco6g00827 360 Coils Coil 246 266 - -
Phco6g00827 360 Coils Coil 53 73 - -
Phco6g00827 360 Gene3D - 87 202 - -
Phco6g00827 360 Coils Coil 339 359 - -
Phco6g00827 360 Gene3D - 203 279 - -
Phco6g00827 360 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Phco6g00827 360 Coils Coil 208 228 - -
Phco6g00827 360 MobiDBLite consensus disorder prediction 293 335 - -
Phco6g00827 360 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 357 - -
Phco6g00827 360 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco6g00827 DFRP_C 8.8e-19 No_clan