Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00822 ATGACAAGGGTTGTCCAGATGAGTGTCGATGGCGACAGCAAAGAGCTGAAAGAACTGAGTCAGCGCTTACGAGATGCGAAGAAGATTGCTGGTGGGGAACATGAGTTATGCGAGGGTGATGAAGTGAAATGTAATGGAGTAAATGAAGAAGTTAAGGTTGGACAGGGGGGGACTGTGGAGTCCTCCTCTACTCAGCAGCATATTCCACAGCCTCAAGGGGCAATAATATGTTGGGAGAGATTTTTGCATATTAGATCCCTTAAAGTTTTGCTTGTGGAGAATGATGACTCTACTCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGTTATTGAAGCAGCAAACGGATTGCAAGCTTGGAAGATATTGGATGATTTAACCAATCATATTGATCTCATTTTAACTGAAGTGGCAATGCCTGGCTTATCAGGCATTGGTCTTCTGTACAAGATTATGGGCCACAAAACTCGGAAAAATATTCCAGTAGTTATGATGTCGTCTCTTGATTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCCGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTCAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTTCTAGTGGGAGTGGCAGTGAAAGTGGAACGCAAACGCAGAAGTCTGTGAAATCAAAGAGTCTTGGGAAGTCTGATAATTTTGGGAGCAATGGTGAAGACGATAATGGAAGTGTAGGCCTGAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCGTGGACCAAACGTGCTGTAGAAGTTGATAGTCCTAAACCTGTCTCTCAGTGGGATCAAATAGCTGAGTGCCCCGACAGTACCTGTGCTCAAGTTGTTCACTCCAATGCTGAAATCAGTGGGAACCGGGTGGTTCTCCTAGGTGCAAAGGAGTGTCCAGAACAGAAGGAACAACTTGTCAAAACTGCAGGTTCTAAAAATAGCAATGCACCCGATGCTGGCCCCTCTAAACCACTGGACCTTAATTGTGACAATCAATCTACCAAGATAAGGTGCAAAGGCTTATTATCATTGTCTGATGCCATTACTAGCACTTCTGATTCTCAGATGCATAGTGGAGAATTTGAAGCCTTAAATAAAAGATCGAAGTCCTCAGATATTGAAAATAAAGGTAATAATAATGATGAAGAATTGCCATCACTTGACCACCTTTGTTTAAAGAAGCTTAGAGGAGTTAAAGATGCTGGTATTACAATTCAGGATGACAGGAGTGTCTTAAGACGTTCTGATCAGTCTGCTTTCTCAAGGTACAATGCAGCCTCTAACGCTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCCTATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCTCGTGATATTCAATCTCATTCTAGCGGCAATCCTCCTAACCAAAATTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTATGCTAAATCTGCAGTTATAAGTGAGCCAGCAGTGGCTTCAACCAAATGTTTGTACCAAACATCCACTTTCCAGCCTATAAAAAACAACCTTGTCTGTAACTCTCAACAAGTTGTCTTACATAACCCTGAAGATAAAGCAGCAACAAGGCTGGCACTACCTAAAGTAGACAGACATAAAGATTCTGCAGCTCCGTACTTCCATCTCCATCATGAAAACCATAACTGTACTGTTGACATGCACCAGCTGCCACCTGATCATGATGCTGAATCTGCAAAGAAAACGGATATTGCTGCTACTCCACATTGTGTGTCATCAAGTGTGGTTGAAGTGCTAGTTGAAGGTAATGTTGGAAACCTCAGTATCAATAGAAGTGTTTCAGGAAGCAATGGACAAAATGGGAGCAGCACAGCAGTTAATGCTGGAGGAACAAACATGGAAAGCAACAATGGACTTCCAGGGAATAGTGGCAGTGGTGATGCTAGTGGAAGTGGAAGTGCCAACAAAGTAGATCAAAACAAGACTTCTCAAAGGGAAGCAGCCTTAACTAAATTTCGCCAAAAGAGAAAAGAAAGAAATGAGCGGTGCTTTCATGAAAAGGTTCGATATCAGAGCAGAAAGAAATTAGCTGAACAACGACCACGATTTCGTGGACAGTTTGTTCGACAGTCGTCTAACGAAAAGACAAGTGGGGCGACGACAGAGAGGTGA 2229 0.4235 MTRVVQMSVDGDSKELKELSQRLRDAKKIAGGEHELCEGDEVKCNGVNEEVKVGQGGTVESSSTQQHIPQPQGAIICWERFLHIRSLKVLLVENDDSTRHVVTALLRNCSYEVIEAANGLQAWKILDDLTNHIDLILTEVAMPGLSGIGLLYKIMGHKTRKNIPVVMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLGKSDNFGSNGEDDNGSVGLNNGDGSDNGSGTQSSWTKRAVEVDSPKPVSQWDQIAECPDSTCAQVVHSNAEISGNRVVLLGAKECPEQKEQLVKTAGSKNSNAPDAGPSKPLDLNCDNQSTKIRCKGLLSLSDAITSTSDSQMHSGEFEALNKRSKSSDIENKGNNNDEELPSLDHLCLKKLRGVKDAGITIQDDRSVLRRSDQSAFSRYNAASNAKKSPTGCVGSNSPYNNSLEVTKKDSSRDIQSHSSGNPPNQNSNGASNNIDMGSTTNNAYAKSAVISEPAVASTKCLYQTSTFQPIKNNLVCNSQQVVLHNPEDKAATRLALPKVDRHKDSAAPYFHLHHENHNCTVDMHQLPPDHDAESAKKTDIAATPHCVSSSVVEVLVEGNVGNLSINRSVSGSNGQNGSSTAVNAGGTNMESNNGLPGNSGSGDASGSGSANKVDQNKTSQREAALTKFRQKRKERNERCFHEKVRYQSRKKLAEQRPRFRGQFVRQSSNEKTSGATTER 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00822 742 PANTHER TWO-COMPONENT RESPONSE REGULATOR 87 310 IPR045279 GO:0009736
Phco6g00822 742 MobiDBLite consensus disorder prediction 211 282 - -
Phco6g00822 742 Gene3D - 86 235 - -
Phco6g00822 742 MobiDBLite consensus disorder prediction 327 346 - -
Phco6g00822 742 FunFam Two-component response regulator-like PRR37 87 246 - -
Phco6g00822 742 Pfam CCT motif 684 729 IPR010402 GO:0005515
Phco6g00822 742 MobiDBLite consensus disorder prediction 478 501 - -
Phco6g00822 742 MobiDBLite consensus disorder prediction 629 742 - -
Phco6g00822 742 Coils Coil 9 29 - -
Phco6g00822 742 MobiDBLite consensus disorder prediction 724 742 - -
Phco6g00822 742 SUPERFAMILY CheY-like 85 211 IPR011006 -
Phco6g00822 742 MobiDBLite consensus disorder prediction 687 721 - -
Phco6g00822 742 MobiDBLite consensus disorder prediction 629 686 - -
Phco6g00822 742 CDD psREC_PRR 89 192 - -
Phco6g00822 742 Pfam Response regulator receiver domain 89 200 IPR001789 GO:0000160
Phco6g00822 742 ProSiteProfiles CCT domain profile. 687 729 IPR010402 GO:0005515
Phco6g00822 742 MobiDBLite consensus disorder prediction 371 403 - -
Phco6g00822 742 MobiDBLite consensus disorder prediction 442 501 - -
Phco6g00822 742 MobiDBLite consensus disorder prediction 211 271 - -
Phco6g00822 742 SMART REC_2 87 202 IPR001789 GO:0000160
Phco6g00822 742 MobiDBLite consensus disorder prediction 442 468 - -
Phco6g00822 742 MobiDBLite consensus disorder prediction 379 403 - -
Phco6g00822 742 ProSiteProfiles Response regulatory domain profile. 88 206 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00822 Phco-Chr6 8101129 8114026 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Phco6g00822 Response_reg 2.1e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00822 6 8101129 8114026 Phco6g00822 6 8101129 8114026 ECH