Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00820 ATGGGTTGGATTCCCTGTTCCGGAAATTCAAACACTAAGAAGAAGCTAAAGAAGAAGTTGGAGAAGATGGAAGTGCAGAGCAGTCTTGTTGATCCGATCAAAGCCACCCCAGGGAAATTGAAGAGGAATTCATCCATGAATTCCAAAGATTCCTCTAGAAATGGAAACCCTGATCACATTGCTGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCTACTAGAAACTTCAGAGCTGAATGTCTTTTAGGTGAGGGAGGCTTTGGCAGAGTCTACAAGGGGCGTTTGGAAAATATTAATCAAATTGTTGCAATTAAACAACTTGACCGAAATGGACTACAAGGGAATAGAGAATTCCTTGTTGAGGTTTTGATGTTAAGTCTTCTTCACCACCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGGGATCAAAGGCTTCTAGTTTATGAATTTATGTCATTAGGATCATTGGAAGACCACTTACATGATATTTCTCCTGGGAAGAAACAACTTGATTGGAACATTCGGATGAAAATAGCTGCTGGAGCTGCAAGGGGATTGGAATATTTACATGACAAAGCTAATCCTCCTGTCATATACCGAGATTTAAAATGCTCCAATATTTTGCTTGGTGAAGGATATCATCCTAAGTTATCTGATTTTGGTCTGGCTAAACTTGGTCCTGTGGGGGAAAACACCCATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTTGTTCTTCTGGAAATAATTACTGGAAGGAAAGCAATTGACAATTCAAGATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCCAGACCCTTGTTCAAAGATCGAAGAAAATTCTCACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTTCAAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCTATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTTGTCACTGCTTTGAGTTACCTTGCGTCACAAAAATATGATCCCAATACACAGACTGTACAAAGCTCACGCCATGCTCCTGGTACTCCTCCTAGAACCAAGAGGGGATAG 1149 0.4212 MGWIPCSGNSNTKKKLKKKLEKMEVQSSLVDPIKATPGKLKRNSSMNSKDSSRNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLENINQIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMSLGSLEDHLHDISPGKKQLDWNIRMKIAAGAARGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRSAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQKYDPNTQTVQSSRHAPGTPPRTKRG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00820 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Phco6g00820 382 MobiDBLite consensus disorder prediction 362 382 - -
Phco6g00820 382 FunFam Serine/threonine-protein kinase PBS1 49 153 - -
Phco6g00820 382 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00820 382 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Phco6g00820 382 CDD STKc_IRAK 83 351 - -
Phco6g00820 382 MobiDBLite consensus disorder prediction 34 58 - -
Phco6g00820 382 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00820 382 PANTHER OS07G0668900 PROTEIN 21 364 - -
Phco6g00820 382 Gene3D Transferase(Phosphotransferase) domain 1 154 372 - -
Phco6g00820 382 Pfam Protein tyrosine and serine/threonine kinase 81 349 IPR001245 GO:0004672|GO:0006468
Phco6g00820 382 Gene3D Phosphorylase Kinase; domain 1 61 153 - -
Phco6g00820 382 MobiDBLite consensus disorder prediction 40 58 - -
Phco6g00820 382 SUPERFAMILY Protein kinase-like (PK-like) 57 351 IPR011009 -
Phco6g00820 382 FunFam Serine/threonine-protein kinase PBS1 154 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00820 Phco-Chr6 8092048 8094937 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Phco6g00820 PK_Tyr_Ser-Thr 3.6e-45 CL0016