Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00790 ATGGTAGCTATTCTGAAGAGACAGAGAGAAGCCGAATCAGAAGAGATTAAGGATTTGGCCAAGAGTTTTTCGCCTCACGAGTTCCAGTGTAAGACGTGTAACCGCAAATTCTCGTCGTTCCAAGCGCTGGGAGGCCACCGGGCCAGTCACAAGAAGCCCAAGTTCAACGGAGAAGAGGAAAAGGATCTGAGTCTGGGCCGGAAGCCCAAAACGCACAAGTGTTCGATTTGCGGGCAGGAATTCTCCTTGGGCCAGGCCCTGGGAGGGCACATGAGAAAACATAAGGGTAGCATGAACGAAGGGTTTTCTTCTTCAATTATTCCCAAAGCACCGCTTCTGAAACGTTCCAATAGCAGCAAGAGAGTGATGTGCTTGGAGTTGGATCTCAACCTAACGCCGTTGGAAAATGACTTGAAGTTGTTGCTTGGAAACAAGGCTCCCACGGTGCATCTTTCGTTGTAG 462 0.4957 MVAILKRQREAESEEIKDLAKSFSPHEFQCKTCNRKFSSFQALGGHRASHKKPKFNGEEEKDLSLGRKPKTHKCSICGQEFSLGQALGGHMRKHKGSMNEGFSSSIIPKAPLLKRSNSSKRVMCLELDLNLTPLENDLKLLLGNKAPTVHLSL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00790 153 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Phco6g00790 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Phco6g00790 153 PANTHER ZINC FINGER PROTEIN ZAT5 16 137 - -
Phco6g00790 153 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Phco6g00790 153 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Phco6g00790 153 SUPERFAMILY beta-beta-alpha zinc fingers 28 94 IPR036236 -
Phco6g00790 153 MobiDBLite consensus disorder prediction 51 69 - -
Phco6g00790 153 Pfam C2H2-type zinc finger 28 53 - -
Phco6g00790 153 Pfam C2H2-type zinc finger 72 95 - -
Phco6g00790 153 Gene3D Classic Zinc Finger 26 48 - -
Phco6g00790 153 SMART c2h2final6 28 50 IPR013087 -
Phco6g00790 153 SMART c2h2final6 72 94 IPR013087 -
Phco6g00790 153 MobiDBLite consensus disorder prediction 45 69 - -
Phco6g00790 153 Gene3D Classic Zinc Finger 63 124 - -
Phco6g00790 153 Coils Coil 2 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00790 Phco-Chr6 7807368 7807829 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g00790 zf-C2H2_6 1.1e-08 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01961 2 50297216 50297683 Phco6g00790 6 7807368 7807829 PCT