Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00789 ATGAAGAGACGCAGAGAAGAGAACGTAGATTTGGCAAATTGTCTAATACTACTCTCTCATCCCACAGAAATCAAACCCCAAAAACTTTTAGACCCTGTGGAATATGAGTGCAGAACCTGCAACCGCAAGTTCTCTTCGTTTCAAGCCCTTGGTGGCCACAGGGCCAGCCACAAAACTCCCAAACAAGACGTGAAAGAAGAGGACAAAATACTGAGATTGGGAAATAAGCCCAAAAGGCACGAGTGCTCCATTTGTGGTCAAGAATTCTCTCAGGGTCAGGCACTGGGAGGACATATGAAAAGGCACAGAATTGCCCTAAACGAAGGGTTTTCTTCAATAAACCAGGTTGTGGTAAAAGTCCCGATTCTGAAAAGGTCGAATAGTAGGAAGGTTATTTGCTTGGATTTGAACTTGACCCCTCTGCAGAATGACTTGAAGTTATTGTTTGGCGACAAAGCACCCAAAGTTGATTCCTTCGTCTGA 483 0.4431 MKRRREENVDLANCLILLSHPTEIKPQKLLDPVEYECRTCNRKFSSFQALGGHRASHKTPKQDVKEEDKILRLGNKPKRHECSICGQEFSQGQALGGHMKRHRIALNEGFSSINQVVVKVPILKRSNSRKVICLDLNLTPLQNDLKLLFGDKAPKVDSFV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00789 160 SUPERFAMILY beta-beta-alpha zinc fingers 35 102 IPR036236 -
Phco6g00789 160 Pfam C2H2-type zinc finger 35 59 - -
Phco6g00789 160 Pfam C2H2-type zinc finger 79 104 - -
Phco6g00789 160 SMART c2h2final6 35 57 IPR013087 -
Phco6g00789 160 SMART c2h2final6 80 102 IPR013087 -
Phco6g00789 160 PANTHER ZINC FINGER PROTEIN ZAT5 4 144 - -
Phco6g00789 160 Gene3D Classic Zinc Finger 34 55 - -
Phco6g00789 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Phco6g00789 160 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Phco6g00789 160 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Phco6g00789 160 Gene3D Classic Zinc Finger 62 116 - -
Phco6g00789 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00789 Phco-Chr6 7803571 7804053 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g00789 zf-C2H2_6 1.2e-10 CL0361