Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00757 ATGGAACTGTTATGGCAAAACGGCCAGGTTGTGATGCACAGCCAAAACCATCGACCACTCAGAAAACCGCCGCATACGTTGCCTTCCGGCAGAGGCGACGGCGTCATTCCGGCCAGGGAGATTCGATCTTCTGAACACGAAAACTACGGTAACCAACACTTGTTCATGCAAGAAGACGAAATGGCTTCGTGGCTTCACTATCCAATCCACGAAGATCCTCCTCCCTTCGATCACCACGATTTCTGCGCCGACATGCTCAATCCGCCGACAAACGCAATAGCGAGCCAGAGTCACAACAGCGCCGCCATGCAATCCTCCATTCGCACGACGGAGCTTCGGAGTCCGGCTCCTCGGCCGCCGATTCCTCCGTCTCGGCTGCCGGTGCCTGCGGCAAAAAGGATGCAGAATTTCGCGCACTTCTCGAAGCAAGGCAATGCGTCGTCGAGTTCGAAGGCCGCGGCGGCGGAGCTCGCTGAAACCGGCCGCGCAAGCGTGACCGCCGCCGATGCAGGTAAGGCGGCAGAGTCTGGAGGAAGGGAGGCGGCGACGTGCGATTTGACGGTGACGTCATCTCCTGGCGGTTCAAGCGGAAGCGCGGAACCGGTTCAGAGGGAACTGGACCGGAAGAGGAAGGGAAGAGAACCGGAGGAATCGGAGTTTCAGAGCGAGGACGTCGATTTTGAATCTCCGGAAGCTAAAAAACATGGGCGTGGTTCTACATCTACTAAGAGATCCCGTGCTGCAGAAGTCCACAATCTCTCCGAGAGGAGGCGTCGAGATAGAATTAATGAGAAAATGAAAGCTTTGCAAGAACTAATACCTCGATGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATATTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGTACCCATGATGTTTCCTGGAATCCAGCAGTATATGCCGCCAATGGGAATGGGAATTGGCATGGGTATGGGCATGGAAATGGGAATGAACAGACCGGTAATGTCATTTCCCAATATGTTAACTACTTCAGCTTTGCCAGCAGCAACTGCAGCTGCGCATTTGGGACCGAGGTTCCCTATGCCTCCTTTCCATATGCCCCATGTTCCTGCCCCTGATTCATCTAGAATGAAAGCAGCAAATCAGTCAGATAATAATATGCTTAACGCACTTGGTACACAAGGTTCAGATCAATCACATATCCCAAACTTCACTGATCCTTATCAGCAATACGTCGGCCTCCAACAGGTGCAGTTACAATTGATGCAGGCAATGAACCAACCAAATGTGAGCAATGCTACTACCAGTAGGAGTCAAGAGAATCCACAAAAACATCGGTCAGATAAATATGGTAGTGCGATTTTAAGTATATACGGGCAAACCTTTTTCATGAAACATGATTGGTTGATATTTGCAATAGCGTTGACAATTCAATTGTGCTGCTCACTATTGGATCGCTGGTTAAGCTTCATCGGTCCCTATACAAAAGCAGCCAAGTGGTGTATTAGGCGAGAGCTAACTTTTTAG 1548 0.5019 MELLWQNGQVVMHSQNHRPLRKPPHTLPSGRGDGVIPAREIRSSEHENYGNQHLFMQEDEMASWLHYPIHEDPPPFDHHDFCADMLNPPTNAIASQSHNSAAMQSSIRTTELRSPAPRPPIPPSRLPVPAAKRMQNFAHFSKQGNASSSSKAAAAELAETGRASVTAADAGKAAESGGREAATCDLTVTSSPGGSSGSAEPVQRELDRKRKGREPEESEFQSEDVDFESPEAKKHGRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMGMEMGMNRPVMSFPNMLTTSALPAATAAAHLGPRFPMPPFHMPHVPAPDSSRMKAANQSDNNMLNALGTQGSDQSHIPNFTDPYQQYVGLQQVQLQLMQAMNQPNVSNATTSRSQENPQKHRSDKYGSAILSIYGQTFFMKHDWLIFAIALTIQLCCSLLDRWLSFIGPYTKAAKWCIRRELTF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00757 515 MobiDBLite consensus disorder prediction 226 257 - -
Phco6g00757 515 FunFam Basic helix-loop-helix transcription factor 241 304 - -
Phco6g00757 515 MobiDBLite consensus disorder prediction 202 218 - -
Phco6g00757 515 Pfam Helix-loop-helix DNA-binding domain 250 296 IPR011598 GO:0046983
Phco6g00757 515 Gene3D - 241 304 IPR036638 GO:0046983
Phco6g00757 515 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 444 IPR031066 -
Phco6g00757 515 MobiDBLite consensus disorder prediction 92 112 - -
Phco6g00757 515 SMART finulus 252 301 IPR011598 GO:0046983
Phco6g00757 515 MobiDBLite consensus disorder prediction 183 198 - -
Phco6g00757 515 Coils Coil 252 272 - -
Phco6g00757 515 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 246 295 IPR011598 GO:0046983
Phco6g00757 515 MobiDBLite consensus disorder prediction 13 33 - -
Phco6g00757 515 MobiDBLite consensus disorder prediction 169 257 - -
Phco6g00757 515 CDD bHLH_AtPIF_like 246 309 IPR047265 -
Phco6g00757 515 MobiDBLite consensus disorder prediction 92 128 - -
Phco6g00757 515 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 249 324 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00757 Phco-Chr6 7535573 7541796 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g00757 HLH 6.3e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00757 6 7535573 7541796 Phco6g00757 6 7535573 7541796 ECH