Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00730 ATGCAGCTGAAAACTCAGTTTTTCTTCTACTTCTGTTGCATTTGCTACTTCTCATACGTCTTTGCATCTGCACCAAATGATGAAGCATCTGCTTTACTTTCTATAAAAGCAGCTCTAATTGATCCATTGAATAGCCTGCTTGATTGGAAATTGTTGGACAAAGCAAAAGGGAAGGGTGCAGCTCATTGTAACTGGACTGGTGTCCACTGCAACTCAGGTGGAGAAGTAGAGAGCCTTGATCTCTCCCGCATGAATCTGAGTGGCATTGTGTCCAATGAGATACAAAGGCTAAAGAGTCTTGCTTCTCTCAACTTGTGTTGCAACCAATTTTCCTCATCATTATCATCCATAGTCAATCTCACCACACTTAAGAGTCTTGATGTGAGCCAGAATTTCTTCACTGGTGACTTTCCATTAGGCCTTGGAAAGGCATTGGGACTTATGACGTTAAATGCATCCAGCAACAATTTCTCTGGCTTTCTTCCTGAGGATCTTGGAAATGTCTCTTCCTTGGAGACTTTGGATCTCAGAGGCAGCTTCTTTGAAGGGTCAGTTCCAAAATCCTTCAGTAACTTGCACAAGCTGAAGTTCCTGGGTTTGTCTGGGAATAATCTCACTGGAGAAATCCCTGGAGAGTTGGGCCAACTCTCATCACTGGAGTGCATGATCATTGGATACAATGAATTTGAAGGTGGTATTCCAGCAGAGTTTGGAAATCTCACCAAGCTAAAGTATCTTGATTTAGCAGAAGGCAATCTTGGTGGTGAGATTCCTGCCGAGTTGGGAAAGCTCAAACTGTTGAAGACAGTTTTCTTGTACAAAAACAAATTAGAAGGCAAGATTCCACCCACAATTGACAACATGACATCATTGGTGCAGCTGGACCTCTCAGACAACATGTTATCAGGAAATATACCGGCTGAAATAAGTCAGCTGAAGAATTTACAGCTTCTGAACTTCATGCGTAACAGGCTATCTGGTCCTGTGCCTTCTGGCCTTGGAGACTTGCCTCAACTTGAGGTGCTTGAGCTATGGAACAATTCCTTGACAGGGTCATTGCCTAGAAACCTTGGCAAGAACTCACCATTGCATTGGTTGGATGTATCATCCAATTTGCTCTCTGGTGAGATTCCAGAAACTCTTTGCACCAAGGGCTATCTCACCAAGCTCATACTTTTCAATAATGCCTTCGTGGGTCCAATTCCAGCAAGCCTATCAACATGCCCTTCAATTGTCCGTGTTCGAATTCAGAACAATTTTCTTTCTGGAACAATTCCTGTGGGTCTTGGTAAGCTTAGGAAGCTTCAGAGGTTAGAATTAGCAAACAATAGTCTCACTGGTGGAATTCCTAATGACATTGGTTCTTCTACATCCCTTTCTTTCATTGATTTTTCCATTAACAATCTCCACTCTTCTCTTCCTTCAACCATTATTTCCATTCCAAATCTGCAAACTTTAATTGCCTCGAACAACAACTTGAGAGGTGAAATCCCAGATGAATTCCAGGATTGTCCCTCACTAGGTGTCCTTGATCTCTCATCGAATGGACTCTCTGGAGGCATTCCAGCAAGCCTTGCATCATGCCAGAAATTGGTAAACTTGAACCTACAGAATAACCAATTGATAGGTGAAATCCCAAAAGCATTAGCAAGCATGCCTACATTGGCCATTCTTGATCTTGCCAACAACTCTCTGAGTGGTCAAATACCTGAAAGCTTTGGTATTTCTCCAGCTCTGGAAACATTCAATGTCTCGCACAACAAGTTAAAAGGCCCTGTCCCAGAAAACGGAGTGCTAAGAACAATAAACCCAAATGATCTTGTGGGCAATGCTGGCTTATGTGGTGCTGTCCTCCCTCCATGTGGCCAAATCTCTGCATATCCGTTAAGGCGTGGGAGCACACATGCAAAGCACATTATTGTTGGATGGATCATTGGAATATCATCAATGCTAGCCATTGGGGTTACAACTATGGTAGCAAGATCTTTATACATAAGGTGGTACACTGACGGATTGTGCTTTCAGGAAAGATTTTATAAGGGTAGGAAGGGGTGGCCATGGAGATTGATGGCCTTTCAGAGGCTTGATTTTACAAGTAGTGAAATTTTATCTTGCATCAAGGATACAAACATGATTGGTATGGGAGCGACTGGGGTTGTCTACAAGGCTGAGATACCACAATCAAGTACAATCGTGGCTGTCAAGAAGTTGTGGAGATCAGGATCTGATATTGAAGTAGGAAGCAGCAGTGATGACCTTGTTGGTGAGGTGAATCTTTTAGGGAGATTAAGGCATAGGAACATTGTTAGACTGTTGGGATTTCTTTACAATGACGCTGATGTGATGATAGTTTATGAATTTATGCACAATGGAAACCTTGGAGATGCCCTGCATGGTAAACAATCAGGGAGATTACTTGTAGACTGGGTTTCCCGATATAACATAGCTCTAGGAATTGCAGAAGGACTTGTTTATCTTCATCATGATTGTCATCCACCTGTTATCCATCGAGACATAAAGTCAAATAATATACTTCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGGTTGGCCAAGATGATGCTCCGGAAGAATGAAACAGTCACCACGATTGCTGGATCTTATGGATACATTGCCCCTGAATATGGATACTCCTTGAAAGTGGATGAAAAGATTGACATTTACAGTTATGGAGTGGTTCTGTTGGAGCTTCTCACTGGAAGGAGGCCCTTAGATCCGGAGTTTGGAGAATGTATGGACATAGTAGGGTGGATTAGAAGGAAGATAGACAAAAAATCTCCACATGAAGCATTAGACCCAAGTGTAGGAAACTGCAAGTATGTTCAAGAAGAGATGCTTCTAGTTCTCAAGATAGCACTTTTATGCACTGCCAAGTTCCCCAAGGAGAGACCCTCCATGAGGGATGTTATAATGATGCTTGGAGAGGCAAAGCCTAGGAGAAAGAGTGGTAGGAACAGTGAAACATTTTCAGCTAACAAGGAAATGCCAGTTATTACTAGCACATCACCAGGAAATGGCCTTCTTTAG 3054 0.425 MQLKTQFFFYFCCICYFSYVFASAPNDEASALLSIKAALIDPLNSLLDWKLLDKAKGKGAAHCNWTGVHCNSGGEVESLDLSRMNLSGIVSNEIQRLKSLASLNLCCNQFSSSLSSIVNLTTLKSLDVSQNFFTGDFPLGLGKALGLMTLNASSNNFSGFLPEDLGNVSSLETLDLRGSFFEGSVPKSFSNLHKLKFLGLSGNNLTGEIPGELGQLSSLECMIIGYNEFEGGIPAEFGNLTKLKYLDLAEGNLGGEIPAELGKLKLLKTVFLYKNKLEGKIPPTIDNMTSLVQLDLSDNMLSGNIPAEISQLKNLQLLNFMRNRLSGPVPSGLGDLPQLEVLELWNNSLTGSLPRNLGKNSPLHWLDVSSNLLSGEIPETLCTKGYLTKLILFNNAFVGPIPASLSTCPSIVRVRIQNNFLSGTIPVGLGKLRKLQRLELANNSLTGGIPNDIGSSTSLSFIDFSINNLHSSLPSTIISIPNLQTLIASNNNLRGEIPDEFQDCPSLGVLDLSSNGLSGGIPASLASCQKLVNLNLQNNQLIGEIPKALASMPTLAILDLANNSLSGQIPESFGISPALETFNVSHNKLKGPVPENGVLRTINPNDLVGNAGLCGAVLPPCGQISAYPLRRGSTHAKHIIVGWIIGISSMLAIGVTTMVARSLYIRWYTDGLCFQERFYKGRKGWPWRLMAFQRLDFTSSEILSCIKDTNMIGMGATGVVYKAEIPQSSTIVAVKKLWRSGSDIEVGSSSDDLVGEVNLLGRLRHRNIVRLLGFLYNDADVMIVYEFMHNGNLGDALHGKQSGRLLVDWVSRYNIALGIAEGLVYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMLRKNETVTTIAGSYGYIAPEYGYSLKVDEKIDIYSYGVVLLELLTGRRPLDPEFGECMDIVGWIRRKIDKKSPHEALDPSVGNCKYVQEEMLLVLKIALLCTAKFPKERPSMRDVIMMLGEAKPRRKSGRNSETFSANKEMPVITSTSPGNGLL 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00730 1017 SUPERFAMILY RNI-like 258 596 - -
Phco6g00730 1017 SMART serkin_6 706 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00730 1017 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Phco6g00730 1017 ProSitePatterns Protein kinases ATP-binding region signature. 712 736 IPR017441 GO:0005524
Phco6g00730 1017 ProSiteProfiles Protein kinase domain profile. 706 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00730 1017 FunFam Leucine-rich repeat receptor protein kinase EMS1 281 363 - -
Phco6g00730 1017 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 240 982 - -
Phco6g00730 1017 Pfam Protein kinase domain 708 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00730 1017 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515
Phco6g00730 1017 Pfam Leucine Rich Repeat 434 454 IPR001611 GO:0005515
Phco6g00730 1017 SUPERFAMILY Protein kinase-like (PK-like) 700 982 IPR011009 -
Phco6g00730 1017 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 180 280 - -
Phco6g00730 1017 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 364 625 - -
Phco6g00730 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672|GO:0006468
Phco6g00730 1017 Gene3D Ribonuclease Inhibitor 27 141 IPR032675 -
Phco6g00730 1017 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 25 179 - -
Phco6g00730 1017 FunFam MDIS1-interacting receptor like kinase 1 706 791 - -
Phco6g00730 1017 Gene3D Phosphorylase Kinase; domain 1 706 791 - -
Phco6g00730 1017 Gene3D Transferase(Phosphotransferase) domain 1 792 1006 - -
Phco6g00730 1017 MobiDBLite consensus disorder prediction 986 1017 - -
Phco6g00730 1017 Pfam Leucine rich repeat N-terminal domain 25 71 IPR013210 -
Phco6g00730 1017 SUPERFAMILY L domain-like 62 353 - -
Phco6g00730 1017 FunFam MDIS1-interacting receptor like kinase 1 792 1001 - -
Phco6g00730 1017 SMART LRR_typ_2 288 312 IPR003591 -
Phco6g00730 1017 SMART LRR_typ_2 240 264 IPR003591 -
Phco6g00730 1017 SMART LRR_typ_2 97 120 IPR003591 -
Phco6g00730 1017 SMART LRR_typ_2 192 216 IPR003591 -
Phco6g00730 1017 SMART LRR_typ_2 480 503 IPR003591 -
Phco6g00730 1017 SMART LRR_typ_2 336 360 IPR003591 -
Phco6g00730 1017 SMART LRR_typ_2 432 456 IPR003591 -
Phco6g00730 1017 Gene3D Ribonuclease Inhibitor 142 228 IPR032675 -
Phco6g00730 1017 Gene3D Ribonuclease Inhibitor 385 625 IPR032675 -
Phco6g00730 1017 Gene3D Ribonuclease Inhibitor 229 384 IPR032675 -
Phco6g00730 1017 MobiDBLite consensus disorder prediction 997 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00730 Phco-Chr6 7247414 7250898 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco6g00730 Pkinase 1.3e-45 CL0016