Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00705 ATGCAGACACAAGAGGAATTACAAGAGGTTTCCAAGGATCAGATGATGATCAAAGGCAAGCGCAACAAGCGTCAAAGGACACCATCCCCTCCTAGGTTTGCCAAGCCCACTTCAACCTCAACTAGCACTAACAATTCCATTGATAGTGCCACAACCTCAACCACCACCAACACCCCAATTGAATCAATAGAAGAAGAAGACATGGTGAATTGTCTCATTCTCCTAGCTCAAGGCACACACCACGTGGCAGCAGCTACACCAGATCAAAACATCAACTACAAAAAGTCAACAAACCCTCGAGTCTTCCGGTGCAAGACTTGCAACAAATGCTTCCCTTCATTCCAATCACTTGGAGGACACAGAACCAGCCACAGGAAGCCCAAGCACAACAGCACTGCTGTAGAAGAAGTTCCTACTTTTATTAGAGACAGTGATCCCACCACAAGCACCACTCTCTCCTTGAAAACACCAAATAGGGTTAATAGTTTGACTAGCACCAGCACGGTCGCCGTGAGAGTTCACCGGTGTTCCACCTGTTATGCTGAATTCTCATCTGGGCAAGCCTTGGGAGGCCACATGAGGCGCCACAGAAATCTTGTGAATGCTTCTTCAATGACGTCCATGAGTGGTGATGGTGGTGGTAGCCAAGAATATCAAGGAGCTAAGAAACCCTTGAATTTGGACTTGAATCTTCCAGCACCAGATGAAGATCCAGGAGAATCCAAGTTTTCGTTTCAGCAAAGAGAAAACGTCATTGTCTTCTCTAATTCTTTGGTGAATTGCAATTACTGA 792 0.4596 MQTQEELQEVSKDQMMIKGKRNKRQRTPSPPRFAKPTSTSTSTNNSIDSATTSTTTNTPIESIEEEDMVNCLILLAQGTHHVAAATPDQNINYKKSTNPRVFRCKTCNKCFPSFQSLGGHRTSHRKPKHNSTAVEEVPTFIRDSDPTTSTTLSLKTPNRVNSLTSTSTVAVRVHRCSTCYAEFSSGQALGGHMRRHRNLVNASSMTSMSGDGGGSQEYQGAKKPLNLDLNLPAPDEDPGESKFSFQQRENVIVFSNSLVNCNY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00705 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Phco6g00705 263 SMART c2h2final6 102 124 IPR013087 -
Phco6g00705 263 SMART c2h2final6 174 196 IPR013087 -
Phco6g00705 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 196 IPR013087 -
Phco6g00705 263 SUPERFAMILY beta-beta-alpha zinc fingers 100 196 IPR036236 -
Phco6g00705 263 MobiDBLite consensus disorder prediction 1 63 - -
Phco6g00705 263 Gene3D Classic Zinc Finger 100 196 - -
Phco6g00705 263 MobiDBLite consensus disorder prediction 31 63 - -
Phco6g00705 263 Pfam C2H2-type zinc finger 173 197 - -
Phco6g00705 263 Pfam C2H2-type zinc finger 101 127 - -
Phco6g00705 263 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Phco6g00705 263 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Phco6g00705 263 PANTHER ZINC FINGER PROTEIN ZAT5 24 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00705 Phco-Chr6 7022500 7023291 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g00705 zf-C2H2_6 4.1e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00705 6 7022500 7023291 Phco2g02074 2 51495436 51496572 ECH
Phco6g00705 6 7022500 7023291 Phco9g00952 9 7750179 7751093 ECH
Phco6g00705 6 7022500 7023291 Phco6g00705 6 7022500 7023291 ECH
Phco6g00705 6 7022500 7023291 Phco10g01468 10 37342753 37343667 ECH
Phco2g02074 2 51495436 51496572 Phco6g00705 6 7022500 7023291 PCT