Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00672 ATGATTACATTCATGGACTCAAAGGAGAAATCGAAGGAGGCGGAGAAGTGTTTGGATCCTCAACTATGGCATGCGTGTGCGGGTGGCATGGTGCAGATGCCAGCGGTGAACACCAAGGTCTATTACTTCCCTCAGGGCCATGCTGAACATGCATGTGGACCGGTTAACTTCAGGAACTGTCCTAAGGTTTCGCCTTTGGTTCCATGCAGAGTGGCTTCCATCAAATACATGGCTGATCCTGAGACCGATGAGGTCTATGCCAAACTCAGGCTTGCTCCTATGAGCGTCAATGATGCTGATTATGACCGTGATGTTGTTGGACCTGAAACTCAGGACAAGCCTGCTTCATTTGCAAAAACCTTGACCCAATCTGATGCCAACAATGGTGGGGGGTTTTCTGTTCCAAGGTACTGCGCTGAGACAATTTTCCCAAGGCTAGATTACTCGGCTGATCCTCCTGTTCAGAACATCCTTGCCAGGGATGTTCATGGAGAAACATGGAAATTTAGACACATCTACAGGGGCACGCCGAGGCGACATCTGTTGACAACTGGATGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCAGGAGACTCAATTGTGTTTTTGAGGGCGGAAAACGGGGATCTGTGTGTCGGGATTCGGCGAGCGAAGAAGGGGATTGGTGGAGGACCTGAGGGCTCCTCTGGGTGGAACCCTGCTGGAGGAAGTTGTCCTATGGCCTATGGTGGATTTTCACCTTTTCTGAGGGAGGAGGACAACAGAATCCTGAGAAATGGTAATAGCAATGGGTTGAACCCAAGTGTGAGTATGACTGGCAGAGGCAAAGTGCGACCAGAAGCTGTTGTTGAAGCTGCAAATCTCGCGGCCAATAAGCAACCATTTGAGGTTGTTTACTACCCTCGGGCAAGTACTCCGGAATTTTGTGTGAAGGCCCCACTAGTAGAAGCAGCACTGCAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACTGAGGACTCCTCACGGATAAGTTGGTTCATGGGAACGATTTCTTCTGTTCAGGTTGCCGATCCCCTTAACTGGCCTAACTCACCTTGGAGACTTCTCCAGGTGACATGGGATGAACCAGATTTACTTCAAAACGTGAGAAGGGTGAGCCCTTGGCTGGTTGAATTGGTGTCAAACATGCCTGCCATTCACCTCTCCCCATTCTCACCACCAAGGAAGAAATTGAGATTGCATCAACACCCAGATTTCCCCCTTGATGGCCAGATTCATTTGCCAACATTTTCCGGCAACCTTCTAGGTCCCAGCAACACCAACCAGTTTGGTTGTCTACCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCACTATGGTCTATCCATATCGGATCTCCACTTCAGTAAACTACATTCAGGTCTATTTCCTGCTGGTTTCCCGCCTCTTGATCACGCTGCTACGCCAATGAGAATCTCTAATAACCTCACATTGCAAAAGCCCACCATCAGTGAGAACGTCTCTTGCTTACTATCTATGGCAAATTCTACTCAATCTTCAAAGAAAATGGATGAAGGGAAGAAGACACCCCAGCTCGTGCTTTTCGGCCAAAAAATTCTCACCGAGCAGCAGATCTCTCTCAGCAGCTCTGTTGACACCTTCTCCCCAGTTTTTAACAGAAATTGTTCCCCCGATGGACATGCTGATAAAGTGGCTAATTTTTCTGATGGTTCTGGATCGGCTCTTCATCAGCATCAGCAGCAGCAGCAAGGCCAACACCAACACCAACATGAACGTTCCTCTTGTGAGAGGTTTCAGTGGTATAGGGATAACCCCCAAGAAACTGAGGCTGGTCTAGAGACTGGTCATTGTAAAGTTTTTATGGAGTCAGAAGATGTAGGAAGGACTATGGACCTCTCGTTGCTCCGGTCCTATGATGAACTCTACAGAAGGCTGACAGACATGTTTGGCATAGAAAAATCTGAGATGTTAAGTCAGGTGCTCTATCGCGATTCAAATGGAGCTGTCAAACACATTGGTGATGAACCATTCAGTGACTTCATAAAATCAGCCAGGAGGTTGACTATTCTAATGGATTCTGGCAGCAACAATGTAGGAGTGTAA 2130 0.4784 MITFMDSKEKSKEAEKCLDPQLWHACAGGMVQMPAVNTKVYYFPQGHAEHACGPVNFRNCPKVSPLVPCRVASIKYMADPETDEVYAKLRLAPMSVNDADYDRDVVGPETQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILARDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEGSSGWNPAGGSCPMAYGGFSPFLREEDNRILRNGNSNGLNPSVSMTGRGKVRPEAVVEAANLAANKQPFEVVYYPRASTPEFCVKAPLVEAALQIRWCSGIRFKMAFETEDSSRISWFMGTISSVQVADPLNWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVSNMPAIHLSPFSPPRKKLRLHQHPDFPLDGQIHLPTFSGNLLGPSNTNQFGCLPESTPAGMQGARHAHYGLSISDLHFSKLHSGLFPAGFPPLDHAATPMRISNNLTLQKPTISENVSCLLSMANSTQSSKKMDEGKKTPQLVLFGQKILTEQQISLSSSVDTFSPVFNRNCSPDGHADKVANFSDGSGSALHQHQQQQQGQHQHQHERSSCERFQWYRDNPQETEAGLETGHCKVFMESEDVGRTMDLSLLRSYDELYRRLTDMFGIEKSEMLSQVLYRDSNGAVKHIGDEPFSDFIKSARRLTILMDSGSNNVGV 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00672 709 FunFam Auxin response factor 324 397 - -
Phco6g00672 709 MobiDBLite consensus disorder prediction 579 597 - -
Phco6g00672 709 Gene3D - 115 219 IPR015300 -
Phco6g00672 709 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 701 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco6g00672 709 SMART B3_2 117 219 IPR003340 GO:0003677
Phco6g00672 709 ProSiteProfiles PB1 domain profile. 623 703 IPR000270 GO:0005515
Phco6g00672 709 MobiDBLite consensus disorder prediction 567 603 - -
Phco6g00672 709 Gene3D - 621 707 - -
Phco6g00672 709 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Phco6g00672 709 CDD B3_DNA 116 217 IPR003340 GO:0003677
Phco6g00672 709 Gene3D - 323 397 - -
Phco6g00672 709 SUPERFAMILY DNA-binding pseudobarrel domain 110 218 IPR015300 -
Phco6g00672 709 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco6g00672 709 FunFam Auxin response factor 115 219 - -
Phco6g00672 709 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00672 Phco-Chr6 6723242 6725695 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco6g00672 B3 4.5e-21 CL0405