Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00660 ATGGGAAGAGCTCCTTGCTGTGACAAGGCCAATGTAAAGAAAGGGCCATGGAGTCCTGAAGAAGATGAAAAGCTAAGAGGGTTTATAGAGAAACATGGTACCGGAGGAAACTGGATTTCCCTCCCACATAAAGCTGGTTTGAAAAGATGTGGGAAAAGTTGCAGACTGAGATGGCTTAATTATCTGAGGCCGAACCTTAAGCATGGAGAGTTTTCTGAAGATGAAGATAGAATAATATGTACTCTCTTTGGTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGCTGCCAGGCAGAACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGGTGGGGACAATGAACCCTTCAGCACTGAAGAACCCTCACCAAGTTACCCTTTCATCCATGCTTCAAAACTCAACACCCTCTTCATCCTCCTCCTCATCTTCATTACCATTAAGAAACAATCACAGCTCGAACTATCAACCCCATATGCCTTTCACAGGCTCTGAGGCCATTTCATACGCAAGTCTTATGAGTGGCAATTCTTCTTCTACTCCAGCTTCCAGTTTTGAGAGGCTTTACCAAGTTAATTGTGGTTTTATGTTAGGGGGTGAAACAAGTTGCAGCTCTTCTTCAGATGGAAGCTGCAAGAAGAATCAGATGAATGATGTGAAAGAAGGAGAAGTTGGATATGTTGGTGTTGGAGGTTTTGGTGACCAAATAGGTGGCCTTAGTTACCTCTCTAGTGGGGTGGAAGATACCCAAAAGTTGGTGTCCTCCAATGCTGGTAGGGCTAGTGGGTGGACAGGTGAAGAAAGTCCATTAGACTATGGTTTAGAAGAAATTAAACAGCTAATAAGCACAAGTAGTTGCAACAACTTTATGTTTGATGACAGCAAGACAGGGGAAATGGTGATGTACTACTGA 933 0.4298 MGRAPCCDKANVKKGPWSPEEDEKLRGFIEKHGTGGNWISLPHKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRIICTLFGSIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMVGTMNPSALKNPHQVTLSSMLQNSTPSSSSSSSSLPLRNNHSSNYQPHMPFTGSEAISYASLMSGNSSSTPASSFERLYQVNCGFMLGGETSCSSSSDGSCKKNQMNDVKEGEVGYVGVGGFGDQIGGLSYLSSGVEDTQKLVSSNAGRASGWTGEESPLDYGLEEIKQLISTSSCNNFMFDDSKTGEMVMYY 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00660 310 FunFam Transcription factor RAX3 7 68 - -
Phco6g00660 310 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phco6g00660 310 SMART sant 67 115 IPR001005 -
Phco6g00660 310 SMART sant 13 64 IPR001005 -
Phco6g00660 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Phco6g00660 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phco6g00660 310 CDD SANT 16 62 IPR001005 -
Phco6g00660 310 Gene3D - 70 141 - -
Phco6g00660 310 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Phco6g00660 310 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Phco6g00660 310 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Phco6g00660 310 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Phco6g00660 310 CDD SANT 70 113 IPR001005 -
Phco6g00660 310 Gene3D - 7 68 - -
Phco6g00660 310 PANTHER OS09G0431300 PROTEIN 1 224 - -
Phco6g00660 310 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00660 Phco-Chr6 6608588 6610018 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g00660 Myb_DNA-binding 1.8e-13 CL0123