Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00639 ATGCAAACTCTTGCTACCCTTCTTCTCATCCTCCTGTTCTTGCGTGGCACTGCACATGGGTTCGGCGCCATGGGTCCAATATCAGCTTCATTTGCAAAAGACGAGGTTTTCTGCGCCATTGATGCTAGCGGGAAGCAAGACGTCATTTGCTGGGGGAATAACGCCACGTCACCGTCTCTCTCCTCCGTTACCAATGCTGTTCCTGCCATGTCAGCACTCTCCGGCGGGGAAGGCTTTCTCTGCGGCATTTTAGCCAACACCTCGCAAGCGTTTTGCTGGGGTGCTGTTACGAAACCCAGCGCAGATCTCATCCTCGTGCCGCCGGCGTACCAGAACACTGCTTATTCCCACATCGCGGCCGGAAAGAATCACGTGTGCGCTGTTCGAGGATCCTACTACGCCGATCACGATTCCGGCACCGTGGATTGCTGGGACATCACGACAACTGCAAACAAAACGTTGACAGCGAAACAGAGTTACTTGTTTTATAACCAAGTCGTGATGAATCTGGAGGTAAAGAGGGTTGTTTCCGGGGAAGGGTTCACCTGTGGCGAGGTCAGAGACGGTGGACTCATATGTTGGGGACCTAAGTCTGGAGGGATAAGAGTTTCCAATGTTTCCGAGAGTTTTGCGGTTTTGGCAGCGGGTCGGAGGGCTGTGTGCGGTGTTTTCAACGTTTCCGGCGAGTTGAAATGCTGGGGCGACCCGGGATCGTTTTCGGATCCTCCGCTGGATTCGGTTCGACTGGTGTCTCTATCTGCTGGGGCTAACCATTTTTGCGGCATTAGAATGGATAACCATGAAGTAGAGTGTTGGGGTGATTTGAACTCTTCTGTGATTCCTCGAGGGAATGGTTTCATGGCTATTGCTTCTTCGGATTTCACCACGTGTGGGATCAGGGAAGATGATCTTCTTCTGGATTGTTGGATGGTAAATGCTTTGAAACCCGATTTTGATCCTCCTTTGGAGCTTTCGAGTCCTGGACTCTGCAGGGCTAGTTCTTGTGGGGTCGGTGAGTTTGCTTTCAATGCTAGTATGCTTAACGAGTTAGCCTTGACTAGCCTCTGTGTTAGAGAGGATTTGAGGATTTGTTCTCCTTGTGGGTCAAATTGTTCTAAAGGGTTCTTCTTGTCAAGTTCGTGTACTAAAAATGCTGATAGAGTCTGCACTGCTTGTTCTCTTTGTCAGAACAGCTCTTGTTTCAGTGTTTGTGGACTTCACTCCTCAACGGGTCTGCGTATGCATTGGCACTGGCATAGTTTGCGTAAATGGATGGTTATAGTTGGGTGCTCCGTGTTGGGGGTTCTGATTATTTTGCTTTATGGGTGTCTTTTTTCTGTCAGAAAGAGGACAAAGAAACAATCCAAGTCTTGCATGGGGAAACCGGAGCAAGAGGATGATCATGTCAATGTTGCTCTTCAATCAACACCTTCTGTTAATTCTTGTCCCGGGGCACCTCAGGTTTTCAGGCTTTCTGAACTGAAGGATGCTACCAATGGGTTTAAGGAGTTTAATGAACTCGGGAGAGGAAGTTATGGATTTGTGTACAAAGCCTTGTTGGCAGATGGGAGGGTGGTTGCTGTTAAAAGAGCAAATGCTGCTACCATAATCCACACCAATAATCGTAATTTTGAAATGGAACTAGAAATTCTCTGTAAAATTCGCAATTGTAATATTGTTAATTTGTTGGGGTACTGCGCTGAGATGGGGGAGAGGTTGCTTGTTTACGAGTATATGCCTCATGGAACGCTTTATGATCACCTCCACGGTGGTCTTTCTCCGCTTAATTGGAGCCTCAGGTTGAAGATAGCGATGCAAGCCGCGAAGGGGCTTGAGTATCTTCACAAGGAACTTGTTCCTCCAATTGTGCATAAGGATCTAAAAAGTTCAAACATTCTTTTGGATTCGGAGTGGGGAGCAAGAATTTCGGACTTTGGACTTCTTGCTTCGAGTGACAAAGATCTCAATGGAGACATAGAAAGCGATGTTTACGATTTTGGGATTGTGATGCTAGAGATTCTGAGTGGAAGAAAAGCTTATGATAGGGATTACACTCCACCCAACATGGTTGAGTGGGCAGTGCCTTTGATCAAACAAGGGAAGGCTGCTGCTACTATTGATAGGTACGTAGCTCTTCCAAGAAATGTTGAACCTTTGCTTAAGCTTGCTGATATAGCAGAACTTGCTGTAAGAGAGAATCCAAGTGAACGACCACCTATGTCCGATATAGCATCTTGGTTGGAGCAAATTGTGAAGGATGGATTAATCTTATAA 2274 0.4692 MQTLATLLLILLFLRGTAHGFGAMGPISASFAKDEVFCAIDASGKQDVICWGNNATSPSLSSVTNAVPAMSALSGGEGFLCGILANTSQAFCWGAVTKPSADLILVPPAYQNTAYSHIAAGKNHVCAVRGSYYADHDSGTVDCWDITTTANKTLTAKQSYLFYNQVVMNLEVKRVVSGEGFTCGEVRDGGLICWGPKSGGIRVSNVSESFAVLAAGRRAVCGVFNVSGELKCWGDPGSFSDPPLDSVRLVSLSAGANHFCGIRMDNHEVECWGDLNSSVIPRGNGFMAIASSDFTTCGIREDDLLLDCWMVNALKPDFDPPLELSSPGLCRASSCGVGEFAFNASMLNELALTSLCVREDLRICSPCGSNCSKGFFLSSSCTKNADRVCTACSLCQNSSCFSVCGLHSSTGLRMHWHWHSLRKWMVIVGCSVLGVLIILLYGCLFSVRKRTKKQSKSCMGKPEQEDDHVNVALQSTPSVNSCPGAPQVFRLSELKDATNGFKEFNELGRGSYGFVYKALLADGRVVAVKRANAATIIHTNNRNFEMELEILCKIRNCNIVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWSLRLKIAMQAAKGLEYLHKELVPPIVHKDLKSSNILLDSEWGARISDFGLLASSDKDLNGDIESDVYDFGIVMLEILSGRKAYDRDYTPPNMVEWAVPLIKQGKAAATIDRYVALPRNVEPLLKLADIAELAVRENPSERPPMSDIASWLEQIVKDGLIL 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00639 757 Gene3D - 156 317 IPR009091 -
Phco6g00639 757 Pfam Protein tyrosine and serine/threonine kinase 505 651 IPR001245 GO:0004672|GO:0006468
Phco6g00639 757 FunFam Serine/threonine-protein kinase-like protein CCR1 579 655 - -
Phco6g00639 757 FunFam serine/threonine-protein kinase-like protein CCR1 470 578 - -
Phco6g00639 757 Gene3D - 22 155 IPR009091 -
Phco6g00639 757 Gene3D Phosphorylase Kinase; domain 1 465 578 - -
Phco6g00639 757 SUPERFAMILY Protein kinase-like (PK-like) 477 748 IPR011009 -
Phco6g00639 757 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 334 389 IPR001368 GO:0005515
Phco6g00639 757 Gene3D Transferase(Phosphotransferase) domain 1 579 655 - -
Phco6g00639 757 Gene3D Transferase(Phosphotransferase) domain 1 656 754 - -
Phco6g00639 757 ProSiteProfiles Protein kinase domain profile. 501 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00639 757 FunFam Serine/threonine-protein kinase-like protein CCR1 656 754 - -
Phco6g00639 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Phco6g00639 757 SMART serkin_6 501 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00639 757 SUPERFAMILY RCC1/BLIP-II 26 278 IPR009091 -
Phco6g00639 757 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 5 751 - -
Phco6g00639 757 ProSitePatterns Protein kinases ATP-binding region signature. 507 529 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00639 Phco-Chr6 6362796 6365069 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Phco6g00639 PK_Tyr_Ser-Thr 3.6e-30 CL0016