Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00631 ATGATGCCCGGTGACCCCTTTTCCCTATCCACTTCCATCGGAGGCTTCACTCAAGAGCAAAATACAAACCCTAACCCTAAACCTAACCCCCCTCCCAAGAAGAAGAGAAACCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTCTCGCCGAAGACCCTCATGGCCACGAACCGATTCATATGCGAGATATGCAATAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACCGAAGGGGTCACAACCTTCCATGGAAGCTACGACAAAGGTCCAACAAAGAGGTAAGGAAGAAGGTTTATATCTGCCCCGAACAATCCTGCGTCCACCACGACCCTGCAAGAGCTCTCGGCGACCTCACTGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAATGCTCCAAGAAATACGCAGTCCAATCAGATTGGAAAGCCCACGCCAAAACCTGTGGCACCAGAGAATACAAATGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTCATTACCCACAGAGCATTTTGCGATGCCTTGGCTGAAGAGAGTGCGAGACTCACCTCAGTTACGTCAACAAATCTAAATTTCAAGAGTGAAGAGGGTGGTAATGTGATGAACTCGCAGCCTGGTTTGGGAGGGCATGGACTAATTGCAGCACAAGGTCTTCAAAATGTTTCTGGCATTCCACAATTTGGTTCACATGGTTTTCGCTTGGATTTTAATGGAATGGAACAACCAAGGCCTAGCTTGTCACTGTGGCTGAACCAGGGGAATCCCCAGATAAATAATAGTAATGTTAACAGCAACAATAATGGTCCCGATGTGGGGCCCAATTACATGTCGTCATGCTCTTCTTCAGGTTTGCCTGATATTGTGCAAATGGCTCAGGCTAATGCTTTGATGGGTTCTACATCGATGGTGTCTAATTTTGGAGTGCCTGCGGGTTCTAATTCCACCAGTGCAAATCTTTCTCTGTCGTCACTTCCTACTGGTAAAAGAGGGGAAGCAGGAGGAGCTGTAGTGGACTTGGCGTCTATTTATAACTCTGAGGGTCCAAACAAGAATTCAAAGCCTGCTTCACCTATGTCAGCCACTGCGCTTCTTCAGAAAGCAGCGCAGATGGGATCCACCAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGAGTGATGAACTCACCTTCGTCACAAACTACCAGTCTCAATAATAACAACAACGGCGGTGCAGCCATGATGCTGGGAAGTAATACCACTGCTGCAACTGATTTTACCTCATTGACGCATTCATCAAACAGTTTTGACCAACTCGTGATGCAAACCAATGCGCAATTGCAAAGTGAACCTGTGAAGCTGAAGCTTCGTTCAAGCGCCGTGGAGCACAATTTGACAAGGGATTTTCTTGGAGTCAGCGGAGGAGGAGGAGGTGGTGGTGGACCTCAGTTCCTACCCCAAGAACTTGCAAAGTTTGCTTCCTTAGGCTCGCCTATGGGATTGAGCCATTTCACAAGTAACCAATGA 1551 0.4797 MMPGDPFSLSTSIGGFTQEQNTNPNPKPNPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEQSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVTSTNLNFKSEEGGNVMNSQPGLGGHGLIAAQGLQNVSGIPQFGSHGFRLDFNGMEQPRPSLSLWLNQGNPQINNSNVNSNNNGPDVGPNYMSSCSSSGLPDIVQMAQANALMGSTSMVSNFGVPAGSNSTSANLSLSSLPTGKRGEAGGAVVDLASIYNSEGPNKNSKPASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMNSPSSQTTSLNNNNNGGAAMMLGSNTTAATDFTSLTHSSNSFDQLVMQTNAQLQSEPVKLKLRSSAVEHNLTRDFLGVSGGGGGGGGPQFLPQELAKFASLGSPMGLSHFTSNQ 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00631 516 Gene3D Classic Zinc Finger 117 195 - -
Phco6g00631 516 Gene3D Classic Zinc Finger 40 114 - -
Phco6g00631 516 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Phco6g00631 516 SMART c2h2final6 138 158 IPR013087 -
Phco6g00631 516 SMART c2h2final6 103 133 IPR013087 -
Phco6g00631 516 SMART c2h2final6 62 84 IPR013087 -
Phco6g00631 516 MobiDBLite consensus disorder prediction 1 45 - -
Phco6g00631 516 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Phco6g00631 516 FunFam protein indeterminate-domain 12-like 41 109 - -
Phco6g00631 516 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Phco6g00631 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Phco6g00631 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 490 IPR031140 -
Phco6g00631 516 Pfam Zinc-finger double-stranded RNA-binding 62 84 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00631 Phco-Chr6 6283332 6285216 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g00631 zf-C2H2_jaz 7.6e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00631 6 6283332 6285216 Phco6g00631 6 6283332 6285216 ECH
Phco2g02018 2 50870332 50873618 Phco6g00631 6 6283332 6285216 PCT