Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00626 ATGGCCGGCGATATTAAGGAGGGGAGAGCTTTGGCAATAGGGTATTCTTTTCTTTTGCTGCTATTGACTTCACTTCTTTGTAGCGCTGAGGGGTTGAACACTGAGGGGCAAATCTTGCTAGAGCTTAAGAATGGACTTCATGATAAATCTAATGTTTTGGAAAATTGGAAGCGTACTGATGAAACCCCATGTGGATGGAAAGGTGTAAATTGCATTTATGATAAGTATAACAATCCAGTGGTTGCATCTCTTAATTTGACTTCAATGGATCTTTCTGGAACTCTAAATGCTTCTGGCATTGGGGGTCTGACCCATCTGACTTATCTCAATCTTGCCTACAATGGGTTGACTGGAAATATCCCCAAGGAGATTGGTGATTGCTTGAATTTGGAATATCTTTATTTGAACAATAATCAGTTTGAGGGCAATATTCCGGCTGAATTGGGTAAGCTGTCTGTTTTGAGAAGTTTGAATATTTACAACAACAAACTCTCTGGTTTGATTCCATATGAGTTTGGGAACTTGTCTTCAATGGTTGAGCTAGTAGCCTATAGCAACTTTCTTGTGGGACCCCTGCCTAGTTCCATTGGAAATCTTAAGAATCTTGTAAATTTCAGAGCTGGGGCAAATAACATTACTGGTAACTTGCCAAAGGAAATTGGTGGATGTAAGAGATTAATGCGTCTAGGTCTTGCACAAAATCAGATAGGAGGGGAGATACCAAGGGAGATTGGGATGCTTGCCAGCTTGAAAGAATTGGTTTTATGGGGAAACCAGCTGTCAGGACCTATTCCTAAAGAGATTGGGAATTGTAGCAGTCTTGAGAACATTGCTATATATGGGAATTATCTTATTGGACCTTTACCTAAGGAAATTGGGAACCTCAAATCCTTGAGGTGGCTGTATGTTTACAGAAACAAGTTGAACGGAACCATTCCAAGGGAAATTGGAAATCTTACTTCATGTTTAGACATTGATTTCTCAGAGAACTCTTTAGTAGGTAGTATCCCTTCAGAGTTTGGTAAAATAAATGATCTAAGTTTGCTTTTTCTCTTTGAGAACCATCTAACTGGTGTTATACCAAATGAGTTAAGTAGCTTGAAAAACCTGTCAAAGCTAGACCTGTCAATAAATAATCTCACAGGTCCAATTCCATTTGGCTTCCAATATTTGACTAAAATGAACCAGTTGCAACTTTTTGACAACTCCCTGAGTGGCATTATTCCCCCGGGACTTGGACTTCATAGTCCCCTTTGGGTTGTTGACTTTTCTGACAACAACTTGACAGGAAGAATACCACTTCATCTTTGCCGAAATTCCAGTTTGATGTTGTTGAATCTTGCAGCTAATCATCTTTATGGAAATATACCAATAGGTATACTAAACTGCAAATCATTGGCACAGTTGTTGATACTTGGAAACAGGCTTACTGGAAGCTTCCCTTTAGAATTGTGTAAGCTGGAGAACTTGACCGCCATTGATTTGAATGAAAACAGGTTCAGTGGTACACTTCCTGATGATATTGGGAACTGCCACAGACTGCAAAGGCTTCATATTGCCAACAATTACTTCACATTGGAGTTGCCTAGGGAAATAGGTAATCTCTCTCAATTGGTGACCTTTAATGTTTCGTCAAATCTTTTCACTGGAAGAATCCCACCTGAAATTTTTTCGTGTCAAAGGCTACAAAGGCTTGATCTCAGCCAGAATAACTTTTCTGGTTCCTTGCCTGATGAGATTGGAACACTTCAGCACTTGGAGATTCTCAAGATTTCAAACAATAGGCTGTCTGGATGTATTCCTGCAGCATTAGGCAATCTGTCTCATTTGAACTGGTTGTTGATGGATGGCAACTATTTTTTCGGCGAAATACCTCCTCAGTTAGGTTATCTTTCAAGCTTGCAAATTGCAATGGATCTCAGTTACAATAACCTTTCTGGAAAAATACCAGTTCAGCTTGGCAGTCTCAACATGCTTGAATATCTCTATCTCAATAACAACCATTTGGATGGTGAAATTCCCAGCACATTTGAAGAGCTATCAAGCTTGTTGGGATGCAATTTCTCATTCAATAACCTCTCTGGGCCTATTCCTTCCACTAAAATTTTCCGAAGTATGGCTGTAAGCAGCTATATTGGTGGTAAGAATGGCCTCTGTGGTGCACCTCTCGGTGACTGCAGCACCAATTCTGCTTCTCACTCTGATACTTCAGGGAAAAGTTTTGATTCTCCTCGCGCTAAAATAGTCATGATCATTGCAGCTTCTGTTGGAGGTATTTCACTCATTTTCATCTTAGTTATTTTATATTTTATGAGACGTCCTCGGGAGTCAATTGATTCCTTTGGAGGCACTGAGGCTCCCTCCCCAGATTCAGATATCTATTTCCCTCCAAAGGAAGGTTTGACATTCCATGATCTAGTTGAAGCTACAAAAAGATTTCATGAAAGCTATGTTATTGGTAAGGGAGCATGTGGAACCGTTTATAAGGCAGTGATGAAATCTGGTGAGACCATTGCTGTTAAGAAGTTAGCATCAAACAGGGAAGGGAACAACATTGAGAATAGCTTCAGAGCTGAAATATCAACTCTGGGAAGAATAAGGCATCGGAACATAGTGAAACTGTATGGATTTTGCTACCACCAGGGTTCCAATCTCCTGCTATATGAGTACATGGAAAGAGGTAGCTTAGGTGAACTATTGCATGGTTCTGCATCTAGTTTGGAGTGGTCAACTCGGTTCATGATTGCTCTTGGAGCTGCTGAGGGTCTTGCTTACTTGCATCATGACTGTAAACCAAAGATTATTCACCGCGATATAAAATCTAACAACATTCTACTGGATGAAAATTTTGAGGCTCATGTTGGTGATTTTGGTTTGGCAAAAGTGATTGACATGCCCCAGTCAAAATCAATGTCTGCTGTTGCTGGATCTTATGGCTATATTGCTCCTGAATATGCATATACCATGAAGGTCACAGAAAAGTGTGACATCTACAGCTATGGTGTTGTGCTCTTGGAATTGATCACTGGAAGAACACCAGTTCAGCCACTAGATCAAGGAGGAGATCTTGTCTCATGGGTGAGGAACTATATCAAGGATCACAACAATTCGCTGACGCCGGATATACTTGATACTCGTGTAGATCTGGAAGACCAAACCACAGTGAATCACATGCTCACTGTTTTGAAGCTTGCTTTAGTATGCACAAGTGTGTCTCCTACAAAGAGGCCATCAATGAGGGAAGTTGTGAAGATGCTTATTGAGTCCAATGAGAGAGAAGGAAACTTGACACTCACTCAAACATACCATGATCTTCCTTCCAAAGATGGCTTGTGA 3336 0.405 MAGDIKEGRALAIGYSFLLLLLTSLLCSAEGLNTEGQILLELKNGLHDKSNVLENWKRTDETPCGWKGVNCIYDKYNNPVVASLNLTSMDLSGTLNASGIGGLTHLTYLNLAYNGLTGNIPKEIGDCLNLEYLYLNNNQFEGNIPAELGKLSVLRSLNIYNNKLSGLIPYEFGNLSSMVELVAYSNFLVGPLPSSIGNLKNLVNFRAGANNITGNLPKEIGGCKRLMRLGLAQNQIGGEIPREIGMLASLKELVLWGNQLSGPIPKEIGNCSSLENIAIYGNYLIGPLPKEIGNLKSLRWLYVYRNKLNGTIPREIGNLTSCLDIDFSENSLVGSIPSEFGKINDLSLLFLFENHLTGVIPNELSSLKNLSKLDLSINNLTGPIPFGFQYLTKMNQLQLFDNSLSGIIPPGLGLHSPLWVVDFSDNNLTGRIPLHLCRNSSLMLLNLAANHLYGNIPIGILNCKSLAQLLILGNRLTGSFPLELCKLENLTAIDLNENRFSGTLPDDIGNCHRLQRLHIANNYFTLELPREIGNLSQLVTFNVSSNLFTGRIPPEIFSCQRLQRLDLSQNNFSGSLPDEIGTLQHLEILKISNNRLSGCIPAALGNLSHLNWLLMDGNYFFGEIPPQLGYLSSLQIAMDLSYNNLSGKIPVQLGSLNMLEYLYLNNNHLDGEIPSTFEELSSLLGCNFSFNNLSGPIPSTKIFRSMAVSSYIGGKNGLCGAPLGDCSTNSASHSDTSGKSFDSPRAKIVMIIAASVGGISLIFILVILYFMRRPRESIDSFGGTEAPSPDSDIYFPPKEGLTFHDLVEATKRFHESYVIGKGACGTVYKAVMKSGETIAVKKLASNREGNNIENSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASSLEWSTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELITGRTPVQPLDQGGDLVSWVRNYIKDHNNSLTPDILDTRVDLEDQTTVNHMLTVLKLALVCTSVSPTKRPSMREVVKMLIESNEREGNLTLTQTYHDLPSKDGL 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00626 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 415 730 - -
Phco6g00626 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 783 890 - -
Phco6g00626 1111 SMART LRR_typ_2 656 679 IPR003591 -
Phco6g00626 1111 SMART LRR_typ_2 247 271 IPR003591 -
Phco6g00626 1111 SMART LRR_typ_2 151 174 IPR003591 -
Phco6g00626 1111 SMART LRR_typ_2 367 390 IPR003591 -
Phco6g00626 1111 SMART LRR_typ_2 583 607 IPR003591 -
Phco6g00626 1111 SMART LRR_typ_2 295 319 IPR003591 -
Phco6g00626 1111 SMART LRR_typ_2 535 559 IPR003591 -
Phco6g00626 1111 SMART LRR_typ_2 103 127 IPR003591 -
Phco6g00626 1111 SMART LRR_typ_2 487 511 IPR003591 -
Phco6g00626 1111 SMART LRR_typ_2 391 415 IPR003591 -
Phco6g00626 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 891 1103 - -
Phco6g00626 1111 SMART serkin_6 813 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00626 1111 Gene3D Phosphorylase Kinase; domain 1 788 890 - -
Phco6g00626 1111 ProSiteProfiles Protein kinase domain profile. 813 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00626 1111 Gene3D Ribonuclease Inhibitor 32 195 IPR032675 -
Phco6g00626 1111 Pfam Protein kinase domain 814 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00626 1111 SUPERFAMILY Protein kinase-like (PK-like) 792 1086 IPR011009 -
Phco6g00626 1111 Gene3D Ribonuclease Inhibitor 349 416 IPR032675 -
Phco6g00626 1111 SUPERFAMILY RNI-like 324 699 - -
Phco6g00626 1111 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 193 286 - -
Phco6g00626 1111 Gene3D Transferase(Phosphotransferase) domain 1 891 1104 - -
Phco6g00626 1111 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 31 192 - -
Phco6g00626 1111 Pfam Leucine rich repeat 561 619 IPR001611 GO:0005515
Phco6g00626 1111 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Phco6g00626 1111 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 287 391 - -
Phco6g00626 1111 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 349 1087 - -
Phco6g00626 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Phco6g00626 1111 Gene3D Ribonuclease Inhibitor 417 730 IPR032675 -
Phco6g00626 1111 Gene3D Ribonuclease Inhibitor 204 348 IPR032675 -
Phco6g00626 1111 Pfam Leucine Rich Repeat 154 175 IPR001611 GO:0005515
Phco6g00626 1111 Pfam Leucine Rich Repeat 129 151 IPR001611 GO:0005515
Phco6g00626 1111 Pfam Leucine Rich Repeat 659 680 IPR001611 GO:0005515
Phco6g00626 1111 SUPERFAMILY L domain-like 33 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00626 Phco-Chr6 6219065 6222971 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco6g00626 Pkinase 9.1e-52 CL0016