Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00623 ATGGGTTCATTCTCTGGCACTTGTGAAATTGTGGAAGCAAGGGATGACCTAAATACAGAGAAAGCTGCCGGGATAGATCAGTCCAATTCTGGATATAGCTTGGATGAGAAAAATCGGAAGCATCCAGTGCAGAAACTGGGATATAAGGATAATCCAGATGATGATATTAATAAGCTGTTTGAATCAATTACGCTTAAATCTTCACCAAGGGATTCTGGCCTTTTACAGGATGGTACAAGCCCTAAGATGAAAAGTTCATTGAAAAAACCAATTACAGTGGGTGCTTCTCGGTCCCCACGAGTTGGATATTCTGAGCCTTTGACTTTGAAGCAGGCATTAAGAGACCTATGTATATCTAAGGCATCAGAAATGGCTGCCATGAAAAGATTATCAAAGTCAACTGCTTCTCCAAGAATATCTGAGGTGGGGAAGATACAGACATTGTACAATTCAGTTGTAGTTGAAGGTAGGCAATCTGGGCCTTCTAATGTTGATAGTACAGGAAGTACAAGTGAAATATCTCTAGTGCCAGAAGAGAGCAGCGCACATGCCTTGGATAAAGCTTCCCAGTCTCATCCAACTGTTAAAAGCACATCACTGAGCCCAAATGTTCAATCTTCCAAAATTGCTGTTGCAACTACAGAAAATGAAACCGGGGCTTCATTGATGTCAGGTAACTTGGCTAGCTCATCAAATAATGTCGGGGTTCTATCACAGTCTTCGAAACATGCTCAAATAGAAAAACAAACATCTACGTCTTCTCCATCTAGTTGTGACACCAATGGAAGTAAGTTAGAGCTGTCTGAAAATGCTTCTTCCTCTAATAAATTAGGAAATAAAACATCGGTATCAAAGAATGGGCAGAAAGGTAGGTTACAAACAGTCTGTTCCTCATCTACTTCAGTAAATGGCAGTAGAGTGTGCAAACTGTCACGCCATGCCCCTCGTACGGTCAAATCAATTATCAAGAACAAAAATTTGGGTAAGAAAAAACTAAAGCAGGATTCCGTTTCTGCTTTATTTGATCCTACATCCAATGAAGTAAATAACAAGTCATTTACTGGTACAACTCAACTTGTTTGTGAGAGATGCTGGTGTGCTATAGAAAACAACAAAGGTATTATATCATTGGACTCTACGAGTTCTGGAGATGGAATAAACTCTGTTAATGTGCACTCAGGTTCAGCACCAGCTGGCTGTAATAGCATCAGAGAAGTTACAAAAGTGAAAAAGAATACCGTATTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAGAGTAGCCAAGGTGACTACAGTAGTAGTACAAGTACAAGTGATGAGAGTAATCTCAGTGGGTCTAGTTGTGGCAATAGGCCTCACATGTCAAAGGATGTTAGATGGGATGCCATACGACATGCTCAAATGCAGCATGGAGTCTTGGGCTTGAGACACTTCAATCTTTTGAAGAAGCTAGGTTGTGGAGACATTGGAACTGTATATCTTGCTGAGCTAATTGGCAAAAGTTGTTTGTTTGCTATCAAGGTGATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGAGCTCAAACTGAAAGAGAAATATTAAGGATGCTGGATCATCCTTTTCTTCCGACACTTTATGGGCAGTTTACATCAGATAATTTATCATGTCTGGTCATGGAGTATTGTCCAGGTGGTGATCTTCATGTTCTACGGCAGAAACAGCTTGGTAGAAGTTTTTCAGAGCCGGCAGCAAGGTTTTATGTAGCTGAAGTACTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTGGTTTACCGTGATTTGAAGCCAGAAAACATTCTTGTTCGAGAAGACGGTCACATTATGCTTACAGATTTTGATCTGTCACTTAAGTGTGATGTTAGCCCAACACTTCTGAAGTCATCTTCTGATGTGGATCCTGCTAAGAATTCTGGTCCTTGTGCACAATCTAATTGCATTGAGCCATTTTGTATTGAACCATCCTGTCAAGTTCCATGCTTCAGCCCTAGACTCCTACCTCCTGCCGCAAAAACAAGGAAATTAAAAACAGATCTCGCTGCCCAGCTCAGATCATTGCCACAGCTCGTGGCTGAACCCACTGATGCAAGATCAAATTCATTTGTTGGTACACATGAATATTTGGCGCCTGAGATAATCAAAGGAGAGGGACACGGAGCAGCAGTTGACTGGTGGACATTTGGTGTTTTTCTGTATGAGCTCTTATATGGCAGAACACCCTTTAAAGGCTGTAATAATGAAGAAACATTAGCCAACGTGGTGTTGCAAGGTCTCAGATTCCCTGATACCCCATTTGTTAGTTTCCAAGCGAGGGATCTCATTAGAGGGTTGTTGGTTAAAGAGCCTGAAAACCGTTTGGGTACAGAGAAAGGGGCTGCTGAGATAAAACAGCACCCCTTCTTTGAAGGCCTTAATTGGGCCTTAATTCGTTGTGCTATCCCTCCAGAACTTCCAGACTTATGTGAATTTGGAGTTTCAGAGATGACTCCACAGTCACAGTGCAAGGGTGTTCAGTATGTAGAGTGTAATGCAGCAGGAGAGCAAGTGGAATTTGAGTTGTTTTAG 2595 0.4143 MGSFSGTCEIVEARDDLNTEKAAGIDQSNSGYSLDEKNRKHPVQKLGYKDNPDDDINKLFESITLKSSPRDSGLLQDGTSPKMKSSLKKPITVGASRSPRVGYSEPLTLKQALRDLCISKASEMAAMKRLSKSTASPRISEVGKIQTLYNSVVVEGRQSGPSNVDSTGSTSEISLVPEESSAHALDKASQSHPTVKSTSLSPNVQSSKIAVATTENETGASLMSGNLASSSNNVGVLSQSSKHAQIEKQTSTSSPSSCDTNGSKLELSENASSSNKLGNKTSVSKNGQKGRLQTVCSSSTSVNGSRVCKLSRHAPRTVKSIIKNKNLGKKKLKQDSVSALFDPTSNEVNNKSFTGTTQLVCERCWCAIENNKGIISLDSTSSGDGINSVNVHSGSAPAGCNSIREVTKVKKNTVLKEQLEFSQSSKSSQGDYSSSTSTSDESNLSGSSCGNRPHMSKDVRWDAIRHAQMQHGVLGLRHFNLLKKLGCGDIGTVYLAELIGKSCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYGQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLKCDVSPTLLKSSSDVDPAKNSGPCAQSNCIEPFCIEPSCQVPCFSPRLLPPAAKTRKLKTDLAAQLRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGCNNEETLANVVLQGLRFPDTPFVSFQARDLIRGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEFGVSEMTPQSQCKGVQYVECNAAGEQVEFELF 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00623 864 Gene3D Transferase(Phosphotransferase) domain 1 559 628 - -
Phco6g00623 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Phco6g00623 864 Pfam Protein kinase domain 480 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00623 864 Pfam Protein kinase domain 708 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00623 864 PANTHER FLIPPASE KINASE 1-RELATED 239 833 - -
Phco6g00623 864 MobiDBLite consensus disorder prediction 231 296 - -
Phco6g00623 864 FunFam serine/threonine-protein kinase D6PK-like 706 829 - -
Phco6g00623 864 MobiDBLite consensus disorder prediction 420 452 - -
Phco6g00623 864 SUPERFAMILY Protein kinase-like (PK-like) 453 830 IPR011009 -
Phco6g00623 864 SMART serkin_6 479 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00623 864 MobiDBLite consensus disorder prediction 184 208 - -
Phco6g00623 864 MobiDBLite consensus disorder prediction 70 86 - -
Phco6g00623 864 FunFam Serine/threonine-protein kinase D6PK-like 477 562 - -
Phco6g00623 864 Gene3D Transferase(Phosphotransferase) domain 1 704 826 - -
Phco6g00623 864 MobiDBLite consensus disorder prediction 33 53 - -
Phco6g00623 864 ProSiteProfiles Protein kinase domain profile. 479 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00623 864 CDD STKc_phototropin_like 477 830 - -
Phco6g00623 864 MobiDBLite consensus disorder prediction 70 89 - -
Phco6g00623 864 MobiDBLite consensus disorder prediction 178 208 - -
Phco6g00623 864 Gene3D Phosphorylase Kinase; domain 1 477 558 - -
Phco6g00623 864 MobiDBLite consensus disorder prediction 420 453 - -
Phco6g00623 864 FunFam serine/threonine-protein kinase D6PK-like 563 630 - -
Phco6g00623 864 MobiDBLite consensus disorder prediction 15 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00623 Phco-Chr6 6179284 6188620 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco6g00623 Pkinase 3.7e-36 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00623 6 6179284 6188620 Phco2g02164 2 52389094 52392688 ECH
Phco6g00623 6 6179284 6188620 Phco9g00997 9 8384229 8387207 ECH
Phco6g00623 6 6179284 6188620 Phco6g00623 6 6179284 6188620 ECH
Phco2g01964 2 50322469 50323824 Phco6g00623 6 6179284 6188620 PCT
Phco2g02164 2 52389094 52392688 Phco6g00623 6 6179284 6188620 PCT