Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00621 ATGGACTTGCAGTTGAAGCAATGGAGAAACCACCATGAGTCAGAACAACAACATTCCACCAACATGCCAAAGTTTATCGCTCAACACCATCCACCACCTGCATCAGCAACACTCCCTCTCTTTCTACTTCAACCCAGCACCAAAGTCACCATTCTGCCATCTTTTTCTGATTCCACCCTACCTTCTGCACCTCCCAGATTTCCCAGGAAGAAGAGTTGTTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGGCTCTGATATTCAGGTACATGCAGGCCGATGCACCCGTTCCTCCTCAGCTGCTTCAACCAATCAAGAAAAGCTTCTTTCATTCCGCTCCCCTTTTCCTTCAACTTTATCACCCTGCATTGTTGGAATCAGGGTACTATTGGGGAAGAGAAGCAGAGGATCCGGAGCCAGGGCGGTGCCGGAGGACGGACGGGAAGAAGTGGCGGTGCTCGAGGGAGGCGGTGGAGGGTCAGAAGTACTGCCAGCGGCACATGCATCGTGGCCGAAACCGTTCAAGAAAGCCTGTGGAACAATCTAGTGCATCTTCTTCTTCACCCTCTCCTTTCTTCAAACATCATCTCCTTCACCTCGATCAGAGTTCCTCTGGGGCCAAGAGTGACAGCAAGAGCTTGTCTGAAAACCATGATCCTGTGGATGGGGATGGCAGATCTGGTGACCATGTCCTGAGGCATTTCTTTGATGATTTGCCAAGGACACTGCAAGAGCCGGACCATGGTGAAAACAATGATAGCCAGAACAACAACAACAATGGAACATATCTTTCTATGTCACCACCAGGAATCACTTCCTCGGATGTGTCACTGAAACTGTCCACTGGTCATGCTTCAATGGGAGGACCACTTGTTGAGGCACTGAGATCATCCACCTCCACTTCTTCACCAACCAGTGTTCTGCTACAGTTGCCAACTAGTTCTGCTTGTGAGACAAACTTCATTAGCATCTAA 978 0.4949 MDLQLKQWRNHHESEQQHSTNMPKFIAQHHPPPASATLPLFLLQPSTKVTILPSFSDSTLPSAPPRFPRKKSCFSFAQWQELELQALIFRYMQADAPVPPQLLQPIKKSFFHSAPLFLQLYHPALLESGYYWGREAEDPEPGRCRRTDGKKWRCSREAVEGQKYCQRHMHRGRNRSRKPVEQSSASSSSPSPFFKHHLLHLDQSSSGAKSDSKSLSENHDPVDGDGRSGDHVLRHFFDDLPRTLQEPDHGENNDSQNNNNNGTYLSMSPPGITSSDVSLKLSTGHASMGGPLVEALRSSTSTSSPTSVLLQLPTSSACETNFISI 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00621 325 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco6g00621 325 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco6g00621 325 MobiDBLite consensus disorder prediction 165 263 - -
Phco6g00621 325 Pfam WRC 139 181 IPR014977 -
Phco6g00621 325 ProSiteProfiles WRC domain profile. 138 182 IPR014977 -
Phco6g00621 325 MobiDBLite consensus disorder prediction 179 193 - -
Phco6g00621 325 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco6g00621 325 PANTHER GROWTH-REGULATING FACTOR 5 31 276 IPR031137 GO:0005634|GO:0006351|GO:0032502
Phco6g00621 325 MobiDBLite consensus disorder prediction 213 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00621 Phco-Chr6 6165220 6167969 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Phco6g00621 WRC 1.6e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00621 6 6165220 6167969 Phco6g00621 6 6165220 6167969 ECH
Phco2g02158 2 52304832 52307723 Phco6g00621 6 6165220 6167969 PCT