Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00615 ATGGAAATGGAAGATCACCATCACCACCACCACCATCAGCATCAGCATCAACATCAACACCAGTTTGGCGTGAACGATCTCAGGCAAGTCGTCAATGGGCCGAGGACCTCCAACAACAACTACCCCTCCATGCCGCCGCACCCAACGGTCGAGCTTTTCCCCGGCCACCGGAATCTCACACCCTTGCCCACTCCCCAACACCATCAACAACACTACGAGGTTATGATGTTCGGTCGTGACATAATGCCACCTAGCCTTCACGACTTCGCTTCCACACCCCATGATTCTGTTGCTGCAGCAGCCACCATGACTCTACCCACTCCACCTACCTTTGATGTCGAGGGTGCAGGTTGCATCGGTGGAGACCCCTCCACTGGAAGATGGCCCAGACAAGAGACCCTCACTCTCCTTGAGATCAGATCTCGCTTGGACCCTAAATTCAAAGAGGCTAATCACAAAGGACCCTTATGGGATGAAGTCTCCAGGATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAAAAGTGCAGGGAGAAGTTTGAGAATTTGTACAAATATTACAAGAAGACAAAAGATGGTAAGGCGGGAAGACATGATGGGAAGCATTACAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAATAGTAGCACAGTTTCAGTCCCAGAATCCAATGTTGTTGGCAGCATTCATTTTCAAGCAAGCAGCCATGCCCCCTCCCAGACAAATCAAGATAAGTTTCAGTCTCACAATAGCAAGAATTGTGATAGCCTCAGCCTCACCAACTCCACTAACTTTGATACAACATCATCTGATGATGACAATGACCACCATAGCATGGAGAATGAGTCCATAGAGAAGAGGAGAAAGAGGAACAGTGGGAGGAGTTGGAAGGTGAAGATAAAAGATTTCATTGACTCGCAGATGAGGAAGCTTGTGGAGAAGCAGAAGGAGTGGTTGGATAAACTGGTGAAGACACTGGAGGAGAAGGAGAAGGAGAGGATGTTAAGAGAGGAAGAATGGAGGAAACAAGAGGCAAACAGGTTAGAGAGGGAGCAAGAGTTTTGGGCGAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTCTAATGGAGGCTTTACAAAAGCTGACTGGAAGAGAAATAATGAAGGCTGAAACTCCCAATGATGGTATAAATATAACGGCTGCTGAAGTTCAAAACCATAGTGAAAACCAGAATAATGAAGATGAGAGTGAAATGTTAAACAGCAGCAATGTTATCAGAGGTGCTGATAGGTGGCCAGAATCGGAAATTACAAGGCTTCAACAGCTGAGAGCTGAGATAGAGACAAGGTTTCCATATAGTGAAATTTCAGAAGAGGTTTCATGGGAGGTAGTAGCAACCAAAATGGCTTGTTTTGGCTACGAAAGGAGTGCTTTGATGTGCAAAGAGAAATGGGAAAGTATCAGTAACTATCCAAGAGAGGGTGACAATAAGGAAGAGAGCAAGAAGTGCAAGGAAAACTCTAGAAGCTGCTTTTACTTCAAGAACAACGATGATCATCGACAATCTTCCTTATACGACCAAGGAAGTGCCTATTGTGATGATATCAGTGATCAAGGGAAAGAGATTGAGAGGCTACAAACAAATAATAGTTCTTTACCTTCAAAATCCAATGCTGGAAATGTTGATCCCTCGGATAGTTGCTTCCCCTTCTTGATGAGTACTGAGAGTGGAAACTTGTGGGAGAACTACGGCCTAAAGCTCAATAAAGAAAACCAAAACCACTGA 1779 0.4514 MEMEDHHHHHHHQHQHQHQHQFGVNDLRQVVNGPRTSNNNYPSMPPHPTVELFPGHRNLTPLPTPQHHQQHYEVMMFGRDIMPPSLHDFASTPHDSVAAAATMTLPTPPTFDVEGAGCIGGDPSTGRWPRQETLTLLEIRSRLDPKFKEANHKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKDGKAGRHDGKHYRFFRQLEALYGENSSTVSVPESNVVGSIHFQASSHAPSQTNQDKFQSHNSKNCDSLSLTNSTNFDTTSSDDDNDHHSMENESIEKRRKRNSGRSWKVKIKDFIDSQMRKLVEKQKEWLDKLVKTLEEKEKERMLREEEWRKQEANRLEREQEFWAKERAWIEARDAALMEALQKLTGREIMKAETPNDGINITAAEVQNHSENQNNEDESEMLNSSNVIRGADRWPESEITRLQQLRAEIETRFPYSEISEEVSWEVVATKMACFGYERSALMCKEKWESISNYPREGDNKEESKKCKENSRSCFYFKNNDDHRQSSLYDQGSAYCDDISDQGKEIERLQTNNSSLPSKSNAGNVDPSDSCFPFLMSTESGNLWENYGLKLNKENQNH 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00615 592 Pfam Myb/SANT-like DNA-binding domain 427 513 IPR044822 -
Phco6g00615 592 Pfam Myb/SANT-like DNA-binding domain 127 213 IPR044822 -
Phco6g00615 592 ProSiteProfiles Myb-like domain profile. 120 185 IPR001005 -
Phco6g00615 592 FunFam trihelix transcription factor PTL-like 128 190 - -
Phco6g00615 592 MobiDBLite consensus disorder prediction 272 292 - -
Phco6g00615 592 CDD GT1 428 491 - -
Phco6g00615 592 SMART sant 124 187 IPR001005 -
Phco6g00615 592 SMART sant 425 488 IPR001005 -
Phco6g00615 592 FunFam Trihelix transcription factor GT-2 429 491 - -
Phco6g00615 592 Gene3D - 429 490 - -
Phco6g00615 592 Gene3D - 128 190 - -
Phco6g00615 592 PANTHER FI21293P1 115 543 - -
Phco6g00615 592 MobiDBLite consensus disorder prediction 1 21 - -
Phco6g00615 592 MobiDBLite consensus disorder prediction 237 271 - -
Phco6g00615 592 Coils Coil 315 342 - -
Phco6g00615 592 ProSiteProfiles Myb-like domain profile. 428 486 IPR001005 -
Phco6g00615 592 CDD GT1 127 192 - -
Phco6g00615 592 MobiDBLite consensus disorder prediction 237 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00615 Phco-Chr6 6061253 6064180 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco6g00615 Myb_DNA-bind_4 4.7e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00615 6 6061253 6064180 Phco6g00615 6 6061253 6064180 ECH
Phco2g02148 2 52196131 52198728 Phco6g00615 6 6061253 6064180 PCT