Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00610 ATGGAGAACTCGCGTAGACCGTTCGATAGATCGCGAGAGCCAGGACCGAAGAAGCCCCGATTGATGGAAGAGCTTGATCGGGCTCCGAATTCGGGTGCGAGACAGTTTCCTCAGCTACAAGTGATTTCTGGGGTTACGACGTTACCGTCTGCAAGGTTTAGAACAAACGAAAGAGACCTTGAAAGCAATGATTTTGGTCGCCGGGGTGGTGCTGGAGGTGGCGGTTATCAGCCCCAGCCACTGCCATTTCAGGAGCTTGTTACTCAGTATAAGGCAGCTCTTGCAGAACTGACTTTCAACTCGAAACCGATAATTACCAACTTGACTATCATTGCAGGGGAGAACCAAGCTGCGGAGAAGGCCATTGCAGCAACTGTTTGTGCTAACATTCTAGAGGTTCCTAGTGATCAAAAGCTGCCATCACTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAAGCATACAGACAGGTTGATCCTTCTGTCCATCAAAGTATGAGACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGATTATTGAGAAAGAATTGGGCTTCACTTCTGCAGTCAATGGCTCATCTGCTTCTGCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATCCATGTTAATCCCAAGTATTTAGAAAGGCAACGTCTACAGCAGTCCAGCAGGACTAAAGGAGTTGTTGATGATATGACTGGAGCAATTTCAAACTCAAATGATGACCTAGAGATGCCTGGTAGAACTTTAGGTGTTTTACGACCATGGGTGGATCCTAATGTTACTGTTAACATCAATTCACGTGAAAATGATCGTGCTCGAAGAGATGCATTCAATGATTCTGTTCCAGAAAAGAGCACTGGTGCATCCTATGGAAGCAATGAATTTGGTTCCAACATTTCAAGGAATTTGGGCTTGGGTATCAGCCGACCTGGTGGTAGGGTGACTGAGTCAGGACATGACAAAGGTTGGTACAACAAATCTGGTGTTGTTGCAGGGACCATGCCTGGACAAAGAAATGGTTTGAGTCTCAAGTATAGTTTTTTGAATACTGAAGCACCAAAGTCCATGATTTTGGATACACATCATCAACCAGCACATAAAATAACAAGCACACAGAGCAGTGTGATCTCAAATAGCTGGAAAAATTCCGAGGAAGAGGAGTACACATGGGATGAGATGAACTCTGGCGTGACTGGTCATGGTACATCTATTGTTAGCAGCTTGAGCAAAGATGCTTGGACTACTGATGATGATAATTTGGAAGTTGAAGATCGCATCCAAGTCAGAAATCCTTTTGTGGTAAATGCCAATAGAGAAATAGCCGTTGAATCTCAAGCCAATGAAAAGAAACGATTTCCTGCATCTCAGCATCATTCATCACTATCATGGAAATTGCAGGAGCAGCACTCTATAGATGAGTTGGATCGGAAGGCTGGTCAGTTGAGCAGATTTGTGTCCACACCGTCTAGTACAAGTGCCTCTACTGCCAGGATGGGGAATCGGCCTTTCCTGTCAAGTGCATCCATAGGATTGCCAGGAGTTGCAGGACCATTTCATTCTTCGGGAGATGAAAACCCTTCTGGACAGTCACCTTTGCGACGGAGGTCTCCTTCACCACCAGGTCCATTCTCTTCAATGACCTTCCAGGCAAGGCATCAGCAGCAATTTGGCACTTCTCACAATGAGGTTACTATTAAGACTGAGAAGCCATCTGTGTCCAAAGTTTCTTTAGCCAGAGAAACTAAAAGTAGCACGAATACAGGGAATCTTCCAACTCGATTAGGTGTTCGACCTTCACGAACAGGTGGTCCTTCCCCTGCCACATTAATTTCTTCAGTGTCCACAATTGCATTACCATCTTCATTAGGTCCTTCCAGTGATAATTCACCTGCTCTCTCAAAAATACATCAAAGAAAGGCTGGACAACCGCCTAGGTTATCTACTCTACCACCTGCATCCTCTAATGTCAGCAGTGCCTCAGCTCAGACAAGTGATGCCAATAATACCTTGAATCCAATTGCTAATCTTTTAAGCTCTTTAGTTGCAAAAGGCTTGATATCTGCAGAAAAAGAATCAACAACTAAGGTGCCCTCTGAGTTGCTGACTCGGTCGGAAGAAGAAAGCGATAGCATTACCACTGGTAACTCTTTGCCTGTGGTCTCAGTTTCTGGTTCTGCAGCTGTTCCAGTCCCTTCTATCAAAGATGAGGTTGATGACACTGCACGAACACCCATATCCTTGTCTGAATCAACCAGCCCAGGAGTTGTAAATCTCATTGGCTTTGAGTTTAAGCTTGATGTATTACGAGAGTTCCATTCATCTGTAATTAGTGGGTTATTTGATGATCTTCCACATCATTGCAGCATTTGTGGCTTTAGACTTAGATTCCAGAAACAGTTAAATAGACACTTGGAGTGGCATGCCACAAGGGATAGAGAAGATAATGGTTTAACTAAGGCATCGAGATGGTATCCTAAGTCAAGTGACTGGATTGTTGGCAAGGCTGAATGTGTATCAGAGAATGAAGCTGATTCTGTAGATACATATGGCAATGAAGCAGACAGAAGTCAAGAGGATGCTACTGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTGTTGTGCGGTGAGCTATTTGAAGATTTTTACTGTGAGGAAAGTGGGGGGTGGATGTTCAAAGGAGCTGTTTACTTTGCTAACTCTGATAGCAACAGTGAGAGGGGATTTGGAGATACGAGTACAGGAAGGGGTCCCATCCTTCATGCAAATTGCTTATCAGATAACTTGATTTCCAGTGTCCCTGAGATGGAACAGGATTAA 2901 0.4419 MENSRRPFDRSREPGPKKPRLMEELDRAPNSGARQFPQLQVISGVTTLPSARFRTNERDLESNDFGRRGGAGGGGYQPQPLPFQELVTQYKAALAELTFNSKPIITNLTIIAGENQAAEKAIAATVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQIIEKELGFTSAVNGSSASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVDDMTGAISNSNDDLEMPGRTLGVLRPWVDPNVTVNINSRENDRARRDAFNDSVPEKSTGASYGSNEFGSNISRNLGLGISRPGGRVTESGHDKGWYNKSGVVAGTMPGQRNGLSLKYSFLNTEAPKSMILDTHHQPAHKITSTQSSVISNSWKNSEEEEYTWDEMNSGVTGHGTSIVSSLSKDAWTTDDDNLEVEDRIQVRNPFVVNANREIAVESQANEKKRFPASQHHSSLSWKLQEQHSIDELDRKAGQLSRFVSTPSSTSASTARMGNRPFLSSASIGLPGVAGPFHSSGDENPSGQSPLRRRSPSPPGPFSSMTFQARHQQQFGTSHNEVTIKTEKPSVSKVSLARETKSSTNTGNLPTRLGVRPSRTGGPSPATLISSVSTIALPSSLGPSSDNSPALSKIHQRKAGQPPRLSTLPPASSNVSSASAQTSDANNTLNPIANLLSSLVAKGLISAEKESTTKVPSELLTRSEEESDSITTGNSLPVVSVSGSAAVPVPSIKDEVDDTARTPISLSESTSPGVVNLIGFEFKLDVLREFHSSVISGLFDDLPHHCSICGFRLRFQKQLNRHLEWHATRDREDNGLTKASRWYPKSSDWIVGKAECVSENEADSVDTYGNEADRSQEDATVVADENQCLCVLCGELFEDFYCEESGGWMFKGAVYFANSDSNSERGFGDTSTGRGPILHANCLSDNLISSVPEMEQD 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00610 966 MobiDBLite consensus disorder prediction 1 37 - -
Phco6g00610 966 MobiDBLite consensus disorder prediction 675 695 - -
Phco6g00610 966 MobiDBLite consensus disorder prediction 542 636 - -
Phco6g00610 966 MobiDBLite consensus disorder prediction 1 27 - -
Phco6g00610 966 MobiDBLite consensus disorder prediction 567 622 - -
Phco6g00610 966 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 40 954 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Phco6g00610 966 ProSitePatterns Zinc finger C2H2 type domain signature. 815 835 IPR013087 -
Phco6g00610 966 MobiDBLite consensus disorder prediction 217 270 - -
Phco6g00610 966 MobiDBLite consensus disorder prediction 217 233 - -
Phco6g00610 966 SUPERFAMILY ENTH/VHS domain 85 204 IPR008942 -
Phco6g00610 966 SMART 558neu5 85 207 IPR006569 -
Phco6g00610 966 FunFam polyadenylation and cleavage factor homolog 4 79 207 - -
Phco6g00610 966 Pfam CID domain 91 200 IPR006569 -
Phco6g00610 966 MobiDBLite consensus disorder prediction 648 695 - -
Phco6g00610 966 MobiDBLite consensus disorder prediction 648 663 - -
Phco6g00610 966 ProSiteProfiles CID domain profile. 82 210 IPR006569 -
Phco6g00610 966 MobiDBLite consensus disorder prediction 720 744 - -
Phco6g00610 966 CDD CID_Pcf11 87 199 IPR047415 -
Phco6g00610 966 Gene3D - 82 207 IPR008942 -
Phco6g00610 966 MobiDBLite consensus disorder prediction 50 78 - -
Phco6g00610 966 MobiDBLite consensus disorder prediction 473 492 - -
Phco6g00610 966 MobiDBLite consensus disorder prediction 242 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00610 Phco-Chr6 6030452 6036942 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g00610 CID 8e-14 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00610 6 6030452 6036942 Phco6g00610 6 6030452 6036942 ECH
Phco2g02144 2 52160906 52166584 Phco6g00610 6 6030452 6036942 PCT