Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00607 ATGAACCCCACCGATGACAACTCTCCCAAGCCGTTGGAGGTTCTGCAAATGAACCCGGTTCCACCGTTTTTGTCCAAGACCTTCGACCTCGTCGATGACCCCACTCTCGACCCGATTATCTCCTGGGGCTCCACGGGCTTTAGCTTCGTCGTCTGGGACCCTCTGGAGTTCGCCAGAATCGTGTTGCCACGACATTTCAAGCACAACAATTTCTCCAGTTTCGTTCGCCAGCTCAATACTTATGGATTCCGCAAGATTGACACAGACAAGTGGGAGTTTTTCAATGAAGCATTCCAGCGATCCAAGAAGCACTTGCTGAAGAACATACAAAGACGTAGATCAACACAATTCCAGCAGGTTGGTAGCTATATTGGAATTGGATCTTCTACCGAGGCAGGGAGGTCTGAGGTTGAGGTTGAGATAGAAAAGCTTAGGAAAGAAAGGACTATGTTGATGGAAGAGGTGGTTGATTTGCAGCAAGAACAACGAAGAACGGCTAACCGTGCAGGAGAAGTGAATCAAAGGCTCCAATCTGCAGAACAAAGGCAGAAACAAATGGTTTCTTTCCTGGCCAAGTTGATCCAAAACCCAGCCTTTTTAGCCCGCCTTAGGCATAAGAAGGAACAAAGAGAAATAGATTCTCCAAGAGTGGTAAGGAAGTTTGTCAAGCAGCACCAACATGAAACTGGAACAGTAGAAACTCTCCAAGAAGGACAGATAGTGAGGTACCAACCTGATTGGAGAAATATGGACACGTCTTCTGGAACTCCAAAACTAAGTCAGGTTTCCATTGAACAGTCTCCTCACTACCTTTCACAGGGTTTGGCAGGAGAAATGAGTGGAGGTGCAGAAGATCTGACTGCTCAAATTGAGAATATTGTAGCAGATGATTTGGCTGCAGAGCACGGGATCACACCACCTCAAGAAATGATGATTGGAGGAGGAGGATCATCCAGCTTTGGAGCTGAAGACCCCCTTTTCAAAGGGAAGAGTGTGATGAGCCCAAGTCTAGAACTTCCTCCAGAATATTTTACTTCATTCCCGGAGGTTTTAACCCAGGAGAAAGGCTTTCAAGATTTTTCTTCTCTTGGAACTGAAGACATTATCAAGCTTGAAGACATATGGGACTCGGACCTCAATCTTAGTGGTGCTGTTTCAACCTGTGGGAATGAGCTGTGGGGCAATCCTATGGATTATGAAGATGTTCCAGAGTTTGGAGTAACAAGTGGCATGTCTGAATCAGACATCTGGGATATTGGCTCTGGAAGTCTGGGAATTGATAAGTGGCCTGGTGATGAACCTTCTATTGGTGAAATAGATGGTCAGGCTGGTCAGCCAAAAGAAGATAGGCCTCAGAATCTTGATCCTTAA 1371 0.4602 MNPTDDNSPKPLEVLQMNPVPPFLSKTFDLVDDPTLDPIISWGSTGFSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRSKKHLLKNIQRRRSTQFQQVGSYIGIGSSTEAGRSEVEVEIEKLRKERTMLMEEVVDLQQEQRRTANRAGEVNQRLQSAEQRQKQMVSFLAKLIQNPAFLARLRHKKEQREIDSPRVVRKFVKQHQHETGTVETLQEGQIVRYQPDWRNMDTSSGTPKLSQVSIEQSPHYLSQGLAGEMSGGAEDLTAQIENIVADDLAAEHGITPPQEMMIGGGGSSSFGAEDPLFKGKSVMSPSLELPPEYFTSFPEVLTQEKGFQDFSSLGTEDIIKLEDIWDSDLNLSGAVSTCGNELWGNPMDYEDVPEFGVTSGMSESDIWDIGSGSLGIDKWPGDEPSIGEIDGQAGQPKEDRPQNLDP 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00607 456 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 248 IPR027725 -
Phco6g00607 456 ProSitePatterns HSF-type DNA-binding domain signature. 62 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00607 456 SUPERFAMILY "Winged helix" DNA-binding domain 19 112 IPR036390 -
Phco6g00607 456 MobiDBLite consensus disorder prediction 421 456 - -
Phco6g00607 456 Pfam HSF-type DNA-binding 23 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00607 456 Coils Coil 134 161 - -
Phco6g00607 456 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00607 456 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00607 456 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g00607 456 Gene3D - 15 113 IPR036388 -
Phco6g00607 456 FunFam Heat stress transcription factor B-4 15 113 - -
Phco6g00607 456 SMART hsfneu3 19 112 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00607 Phco-Chr6 6000013 6002735 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco6g00607 HSF_DNA-bind 1.4e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00607 6 6000013 6002735 Phco6g00607 6 6000013 6002735 ECH