Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00598 ATGATGATGAAGCATCACCATCTCTTGTTCCTCATCTTTTTATTTTTCTTACCATTTTTCACGTTCAGTCTCCACCACAATGATACTCGTGCACTCACCCTCTTCCGCCGCCAAAGCGACGTTCATGGCTACCTTCTTTCCAACTGGACCGGCGGAGACGCATGCGCCACCGCGTGGCGCGGCGTCCTCTGCTCCCCGAACGGCCGCGTCACCGCCCTCTCCCTCCCTTCCCTCAACCTCCGGGGCCCCCTCGACCCTCTCACTCCCCTCACCCACCTCCGCCTCCTCGACCTTCACGACAATCGCTTGAACGGCACAGTTTCGCCGCTCCTCTCCAACTGCACCAACATCCAACTCCTTTACCTCGCCGGCAATGACTTCTCCGGCGATATCCCGCCGGAGATATCCTCCCTCAAATCTCTTCTCCGCCTCGACCTCTCCGACAATAACATACGCGGCGAGGTTGACTTTCTCTCCAACTTAACACGACTCATTACACTGAGACTCCAGAACAACCTTCTCTCAGGTGAAATCCCTGACCTGTCTTCCTCCATGCAAAACCTCAGAGAAGTCAACATGACAAACAACGCCTTCTACGGTCGTTTACCAAACCCCATGCTGAATAAATTCGGTGTCACAGCCTTCTCAGGTAACGAGGGTTTATGTGGCGCAACACCGTTACCTGTCTGTTCCTTCACCACAAACCCTCCTAAAGATAATGAGAATAGCAATGAAAATGAACCGTCTCAGACAGTTCCTTCAAACCCCAGTTCCTTCCCCGAGACCAGCATAATAGCTCGACCGGGGAAGGAGCATCATAAGGGTTTAAGTCCCGGTGCCATTGTGGCAATTGTTGTGGGGAATTGTGTGGCGTTGCTTGTGATGACATCATTTCTCGTGGCACATTGTTGCGCAAGGGGGAGAGGGTCTAGTTTGGTGGGGAGTGGGGAGAGTTATGGGAAGAGGAAGAGTGGGAGCAGTTACAATGGGAGTGAGAAGAAGGTGTATGGAAGTGGGGGTGGTGAGAGTGATGGGACTACTGGGACTGATAGGAGTAGGCTTGTGTTTTTTGATCGGAGGAGTGAGTTTGAGTTGGAGGATCTGCTGCGAGCCTCGGCGGAGATGCTTGGGAAGGGGAGTTTGGGAACGGTTTATAGGGCGGTGCTTGATGATGGATGCACCGTGGCGGTGAAGAGGCTAAAGGATGCCAACCCTTGCGCCAGGCATGAGTTTGAGCAGTATATGGATGTGATTGGGAAGCTTAAGCACCGGAATGTTGTGAGACTCAAAGCCTATTACTATGCCAAAGAGGAAAAGCTTCTTGTCTATGACTATCTCTCCAATGGAAGCTTGCATACTCTTCTTCATGGGAATCGTGGTCCGGGGAGGATTCCGTTGGATTGGACTACAAGAATAAGCCTGGTGTTGGGAGCAGCAAGAGGTCTTGCGAAGATCCACGTAGAGTACAGTGCAGCCAAAGTGCCTCACGGGAACGTGAAATCTTCGAACGTGCTTCTGGACAAGAACGGCGTGGCTTGCATCTCGGACTTCGGACTGTCACTCCTCTTGAACCCGGTTCACGCCATTGCTCGATTGGGAGGGTACAGGGCCCCTGAACAGGAACAGCACAAGAGGCTGTCTCAGCAGGCTGACGTGTACAGCTTCGGGGTGTTGCTGTTGGAAGTTCTCACAGGAAGAGCTCCTTCGTCGCAGTACCCTTCACCGGCTCGTCCCAGAATGGAGGAAGAGGAACAGGCCGTGGTGGACCTTCCCAAATGGGTTCGCTCCGTGGTGAAGGAAGAGTGGACCGCAGAGGTGTTTGACCAGGAGCTTTTGCGCTACAAGAACATCGAGGAAGAGCTTGTGTCCATGCTTCATGTGGGGTTGGCCTGTGTGGTGGCGCAGCCGGAGAAGAGGCCAACTATGGAAGAAGTTGTAAAGATGGTTGAGGAGATCAGGGTGGAGCAATCACCTCTTGGGGAGGACTATGATGAATCGCGCAATTCGCTTTCACCTTCCATTCCCACCACTGAAGATGGTCTAGCTTAG 2049 0.53 MMMKHHHLLFLIFLFFLPFFTFSLHHNDTRALTLFRRQSDVHGYLLSNWTGGDACATAWRGVLCSPNGRVTALSLPSLNLRGPLDPLTPLTHLRLLDLHDNRLNGTVSPLLSNCTNIQLLYLAGNDFSGDIPPEISSLKSLLRLDLSDNNIRGEVDFLSNLTRLITLRLQNNLLSGEIPDLSSSMQNLREVNMTNNAFYGRLPNPMLNKFGVTAFSGNEGLCGATPLPVCSFTTNPPKDNENSNENEPSQTVPSNPSSFPETSIIARPGKEHHKGLSPGAIVAIVVGNCVALLVMTSFLVAHCCARGRGSSLVGSGESYGKRKSGSSYNGSEKKVYGSGGGESDGTTGTDRSRLVFFDRRSEFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCARHEFEQYMDVIGKLKHRNVVRLKAYYYAKEEKLLVYDYLSNGSLHTLLHGNRGPGRIPLDWTTRISLVLGAARGLAKIHVEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQEQHKRLSQQADVYSFGVLLLEVLTGRAPSSQYPSPARPRMEEEEQAVVDLPKWVRSVVKEEWTAEVFDQELLRYKNIEEELVSMLHVGLACVVAQPEKRPTMEEVVKMVEEIRVEQSPLGEDYDESRNSLSPSIPTTEDGLA 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00598 682 MobiDBLite consensus disorder prediction 311 347 - -
Phco6g00598 682 ProSiteProfiles Protein kinase domain profile. 370 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00598 682 ProSiteProfiles Leucine-rich repeat profile. 140 162 IPR001611 GO:0005515
Phco6g00598 682 Pfam Protein kinase domain 374 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g00598 682 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Phco6g00598 682 Gene3D Ribonuclease Inhibitor 21 94 IPR032675 -
Phco6g00598 682 Gene3D Transferase(Phosphotransferase) domain 1 446 670 - -
Phco6g00598 682 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 654 IPR046959 -
Phco6g00598 682 MobiDBLite consensus disorder prediction 656 682 - -
Phco6g00598 682 SUPERFAMILY Protein kinase-like (PK-like) 374 650 IPR011009 -
Phco6g00598 682 MobiDBLite consensus disorder prediction 233 264 - -
Phco6g00598 682 Gene3D Phosphorylase Kinase; domain 1 346 445 - -
Phco6g00598 682 Gene3D Ribonuclease Inhibitor 96 231 IPR032675 -
Phco6g00598 682 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 446 661 - -
Phco6g00598 682 SUPERFAMILY L domain-like 26 208 - -
Phco6g00598 682 MobiDBLite consensus disorder prediction 233 262 - -
Phco6g00598 682 FunFam pollen receptor-like kinase 1 341 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00598 Phco-Chr6 5869277 5871602 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco6g00598 Pkinase 2.2e-34 CL0016