Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00592 ATGACCTTTGTCTCAGCAATCTCTGTCATCATTTTGGGGCCGAAAGAAAGGGCTTCCTTATCGCTCCAACCTCTGCTTTTATTTGTAGCAAAGATAAAGATTGAAGCTGGAGTGGAAGTTAAAGCGAAGAGAGACAAGAAAACAAGGCCAGACATGGAGTGGAATGGGAGCACAAGACGTTATGTTCCTCGACCAGAGTCTTCCTTCAGCTTCCTTTACAACTACAACTACACCCCTTACCCAGGAATGGAAGTGAAGCAACAAAGTCTAGCAGAGTCAAGTTCATCCATGGAAAAAATGAACTGCGGGAACCAGGACAAGAAGAAGAGATTAACAAGTGATCAGTTAGACTCGTTGGAGAGTAGTTTTCAGAAGGAGATAAAGCTGGACCCTGATAGGAAGATGAAGCTTTCCAAGGAGTTAGGGCTGCAACCTCGCCAAATTGCCGTTTGGTTCCAAAATAGGCGTGCAAGGTGGAAGAACAAGCAACTTGAACACTTGTACGATTCACTTAAACAGGAATTTGATGTCATATCCAAGGAAAAACAGAAGCTAGAGGAAGAGGTAATGAAGTTGAAGGGAATGCTGAGAGAGCAAGCTTCTAGAACCCAAGTGTCAACAGGTTACACAGAAATCTCTGGGGAAGAAACAGTAGAAAGCACGTCAGAGGCTCTGCGTTGCTCCAAACGGAGAACACTGCAGCCGCAGCAGCAGCAGAATATTGGAGAAGGAAACTGTTCTTTCACTTTGGAAGATTACAACACAGTTCCAGTACTACCCTACTGGCCTGGAGTCCCTTACTACCCCTAA 810 0.4494 MTFVSAISVIILGPKERASLSLQPLLLFVAKIKIEAGVEVKAKRDKKTRPDMEWNGSTRRYVPRPESSFSFLYNYNYTPYPGMEVKQQSLAESSSSMEKMNCGNQDKKKRLTSDQLDSLESSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKNKQLEHLYDSLKQEFDVISKEKQKLEEEVMKLKGMLREQASRTQVSTGYTEISGEETVESTSEALRCSKRRTLQPQQQQNIGEGNCSFTLEDYNTVPVLPYWPGVPYYP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00592 269 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 94 229 IPR045224 GO:0003700
Phco6g00592 269 Coils Coil 154 202 - -
Phco6g00592 269 PRINTS Lambda-repressor HTH signature 133 142 IPR000047 GO:0003677
Phco6g00592 269 PRINTS Lambda-repressor HTH signature 142 158 IPR000047 GO:0003677
Phco6g00592 269 Pfam Homeodomain 107 161 IPR001356 GO:0003677
Phco6g00592 269 SUPERFAMILY Homeodomain-like 92 164 IPR009057 -
Phco6g00592 269 CDD homeodomain 107 163 IPR001356 GO:0003677
Phco6g00592 269 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981|GO:0006355
Phco6g00592 269 FunFam Putative homeobox-leucine zipper protein ATHB-51 104 167 - -
Phco6g00592 269 SMART HOX_1 105 166 IPR001356 GO:0003677
Phco6g00592 269 Pfam Homeobox associated leucine zipper 162 196 IPR003106 GO:0006355|GO:0043565
Phco6g00592 269 MobiDBLite consensus disorder prediction 88 115 - -
Phco6g00592 269 Gene3D - 99 170 - -
Phco6g00592 269 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00592 Phco-Chr6 5830612 5833903 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco6g00592 Homeodomain 4.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00592 6 5830612 5833903 Phco6g00592 6 5830612 5833903 ECH
Phco6g00592 6 5830612 5833903 Phco2g02117 2 51944674 51954175 PCT