Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00566 ATGGCACAAATTTGCACAATCCCCAGAACAATGACAGCTAAAGATGCTGTCTTCAAAAGAGGGATGGAGGCCATTGGCTCTGTGGATGACCTCTTGGATTTTTCGTTGGACATAGGTGAGGAAGATGATGATGAAGACAAACCTAGGAAATCCTGTCCTTCACTTAACTCAAAATGTGGCAACCCATCATTGTTTAATCCATTGGTACCAGATGATCCGAACCATTCATATTCAGAGTTTGTAGAAGAAGAGCTTGAATGGCTATCCAATAAAGATGCATTTCCTTCTGTTGAAACATTTGTTGACCTATCATGTATTCAACCTGACACAGCCAAGATGCGAAAAACAACCCCAGTAACAACCCCAATGCTTGAGTACAGCACAGGCAGTAGCAACAGTAATAACAGCAGTAACAGTATTTCCCTCCTAAACAGCTGTGATCACCTTAAGGTTCCAGTCCGTGCACGGAGCAAGAGACGCAGTAGGTGTCGCCCTGGCATTGCTGACGAAAACTCTGGTCAGCAATTCTGGTGGAGACAACCAAGTAATGAAACTTCCAAGGCAGAAGAAGGGATGAAAATCTCGCCAATTGGGAGGAAATGTCAGCACTGTGGGGCTGAAAAAACTCCACAGTGGCGAGCAGGTCCCCTTGGGCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGTCGCCTTGTGCCTGAATACCGTCCTGCTAGTAGCCCAACTTTTCGTAGTGATTTGCATTCTAATTCCCACAGGAAGATAACAGAGATGAGGAGGCAGAAGCAAATGGGAATGGGATAA 816 0.451 MAQICTIPRTMTAKDAVFKRGMEAIGSVDDLLDFSLDIGEEDDDEDKPRKSCPSLNSKCGNPSLFNPLVPDDPNHSYSEFVEEELEWLSNKDAFPSVETFVDLSCIQPDTAKMRKTTPVTTPMLEYSTGSSNSNNSSNSISLLNSCDHLKVPVRARSKRRSRCRPGIADENSGQQFWWRQPSNETSKAEEGMKISPIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFRSDLHSNSHRKITEMRRQKQMGMG 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00566 271 CDD ZnF_GATA 200 248 IPR000679 GO:0006355|GO:0043565
Phco6g00566 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 258 - -
Phco6g00566 271 SMART GATA_3 195 245 IPR000679 GO:0006355|GO:0043565
Phco6g00566 271 Gene3D - 195 248 IPR013088 GO:0006355|GO:0008270
Phco6g00566 271 ProSiteProfiles GATA-type zinc finger domain profile. 195 231 IPR000679 GO:0006355|GO:0043565
Phco6g00566 271 PANTHER GATA TRANSCRIPTION FACTOR 27 267 - -
Phco6g00566 271 Pfam GATA zinc finger 201 234 IPR000679 GO:0006355|GO:0043565
Phco6g00566 271 MobiDBLite consensus disorder prediction 241 271 - -
Phco6g00566 271 FunFam GATA transcription factor 190 270 - -
Phco6g00566 271 ProSitePatterns GATA-type zinc finger domain. 201 226 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00566 Phco-Chr6 5564498 5567030 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco6g00566 GATA 9.8e-17 CL0167