Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00544 ATGGTGGTGGGGGAGTCTGATATGAACTCACAAAACGAGGTTGAATCTCCAATACAGTTGGAGCAACAGCACAACATCAACAAGAACCATCCATTCTCTTCACTGGGAAGAGAAGCTTCCATCTACTCCCTCACCCTCGATGAGTTCCAACACACGCTATGGGAGAGTGGCAAGAACTTTGGGTCCATGAACATGGACGAGTTTCTCAGCAGCATATGGTGCGCAGAGGAAAGTCAAATTTTAAACAACAACAACAACATGAACAGTTTGTCACTGAGTGAAGCTTCCGCTGAAAAAGGGTTGATAAGGAAGCAACCAAGCCTTCCTCGGCAAGGGTCTCTAACACTTCCTGCACCTCTGTGTAGGAAAACAGTGGACGAGGTTTGGTCTGAGATACACAAAGTACAACAACAACAACGGCAACAACAACAGAACAACAACAATAACCGTGGAACTGTTAATAATAACAACAATGCTCAAAATACCGAATCTACCCGCCGTCAGCCTACCTTTGGAGAGATGACTTTGGAGGACTTCCTGATAAAAGCTGGGGTAGTTAGGGAACAGCGTTCCCTTGCAATGTCAGTTCCAGCTTCTACAAGTCAAAATCAGCATATGCAGCACTATGGCTTCTTTCCTAATAACAACCGTACAATAGAGCCTTCTTTTCTCGGAAGGCAGGTGATGGGGGTTGGTGTCGGCGGCAGTGCTGGTGGGAATGTGGTTGCACCGCCTTATCAGGCTGTGGCTCAGGGTGGTGGTGGTGGTGCAGTTGGGGAGTCTTCTGTGTATTCGGCAGTTTGCTTTGGACCGAGGGTAGTGAATGGTGGCGGTGGTTATGCGGCAGTGAGTAAAATGGGAGTGGTGGCGCCGGTGAGCCCGGTTTCACCGGAGGGGATAGGTACTGGTGAAAATTTTGGTTGCCGGTTTGGGATGGACAGAGGTGTGTTAAGAGGGAGAAAGAGGGTGCTGGATGGGCCTGTGGAGAAGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCTAGAGCAAGAAAACTGGCATACACAGTTGAATTGGAAGCAGAATTGAACCAGTTGAAAGAAGAGAACGGTCAACTTAAACTAGCACTGGCTGATCTTGAGAGGAGAAGAAAGCAACAGTATTTAGAGGAAGGGAATTGCAGAGTTGAAACCAACGTTGAAAAGGCTAAAAAGAAATCGAGATCATTGAGAAGAACTCTGAGTTGCCCTTTATGA 1260 0.4762 MVVGESDMNSQNEVESPIQLEQQHNINKNHPFSSLGREASIYSLTLDEFQHTLWESGKNFGSMNMDEFLSSIWCAEESQILNNNNNMNSLSLSEASAEKGLIRKQPSLPRQGSLTLPAPLCRKTVDEVWSEIHKVQQQQRQQQQNNNNNRGTVNNNNNAQNTESTRRQPTFGEMTLEDFLIKAGVVREQRSLAMSVPASTSQNQHMQHYGFFPNNNRTIEPSFLGRQVMGVGVGGSAGGNVVAPPYQAVAQGGGGGAVGESSVYSAVCFGPRVVNGGGGYAAVSKMGVVAPVSPVSPEGIGTGENFGCRFGMDRGVLRGRKRVLDGPVEKVVERRQRRMIKNRESAARSRARKLAYTVELEAELNQLKEENGQLKLALADLERRRKQQYLEEGNCRVETNVEKAKKKSRSLRRTLSCPL 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00544 419 SUPERFAMILY Leucine zipper domain 334 383 IPR046347 GO:0003700|GO:0006355
Phco6g00544 419 FunFam BZIP transcription factor 332 383 - -
Phco6g00544 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 332 384 IPR004827 GO:0003700|GO:0006355
Phco6g00544 419 MobiDBLite consensus disorder prediction 1 20 - -
Phco6g00544 419 SMART brlzneu 330 392 IPR004827 GO:0003700|GO:0006355
Phco6g00544 419 Gene3D - 332 383 - -
Phco6g00544 419 Pfam bZIP transcription factor 334 384 IPR004827 GO:0003700|GO:0006355
Phco6g00544 419 CDD bZIP_plant_BZIP46 334 388 - -
Phco6g00544 419 Coils Coil 357 384 - -
Phco6g00544 419 MobiDBLite consensus disorder prediction 132 171 - -
Phco6g00544 419 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 36 418 IPR043452 GO:0003700|GO:0045893
Phco6g00544 419 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 337 352 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00544 Phco-Chr6 5308151 5311242 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco6g00544 bZIP_1 6.8e-11 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02179 2 52508377 52510964 Phco6g00544 6 5308151 5311242 PCT