Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00534 ATGTCGATAAACCACTACTCCATGGACCTTCCCGAAACAACACTGTGGTGGCCCCAACAACAGCAACAACCCATCCTAATGGAACCAACCCCAAACCCCTCCTCCACTTCCTGGCCCTCTGCAGACCCTCTGTGTCTCAACCTCAACCACCAAAACGATGACGTAGAAGAAGACGAGGAAGAGGACCGAACAACAACCACTACACAGCAAGAAGAAACTGAAGACGAGAAGGAACCCATGTTCGAGAAGCCTCTAACTCCAAGCGACGTGGGGAAGCTCAACCGCCTCGTAATCCCGAAGCAGCACGCCGAGAAGTACTTCCCGCTCAGTGGTGGCGGCGGCGGCGACTCGGGCGAGTGCAAGGGGCTCCTATTGAGTTTCGAGGACGAGTCGGGTAAGTGCTGGCGGTTTCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGCTATGTCAAGGACAAGCGCCTCGACACCGGCGACGTCGTCTTGTTCGAGCGCCACCGCGCCGACGCTCACCGCCTCTTCATCGGATGGAGGCGCCGGCGACACGGCGACACCTCGCCGGTGCACGTTAGCAGCAGGGCGGTGGGGCACGGGAAGAGTGGCAATGGGAATAGTAAGAATGAGGGTGCTGCTGCTGGTGGTGGTCTCGGGTGGACCAGAGGGTTCTATTCTGCGCATCCTTATCCTACGCATCAGCAGCACGTGCATAATCATCGGCCCTTACCATACCAATATGACTGTCTTCATGCAGGAAGAGGGTCCCAAGGAGAGAGAGAAAGGACGAGAGCAGTGGGAAAGAGTGGGAGTCCCAGTTGCAGTTCAAGTTCTAGTTCAAGGGTACTTAGGCTGTTTGGGGTGAACATGGAATGCGAAGCTGAAGATGATTCTGGACCCTCCACACCCCAATTCTCCTACAATACTACCAACGTGCCCTCCACACAGGGCACACAAAACCCTCACCATTTCCCTCAACCTCAACCTCAACCTCAACCTCAACCTCAACCTCATCAAATCCTACGTCACCAACCTTACTACTACTACTAG 1068 0.5552 MSINHYSMDLPETTLWWPQQQQQPILMEPTPNPSSTSWPSADPLCLNLNHQNDDVEEDEEEDRTTTTTQQEETEDEKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDTGDVVLFERHRADAHRLFIGWRRRRHGDTSPVHVSSRAVGHGKSGNGNSKNEGAAAGGGLGWTRGFYSAHPYPTHQQHVHNHRPLPYQYDCLHAGRGSQGERERTRAVGKSGSPSCSSSSSSRVLRLFGVNMECEAEDDSGPSTPQFSYNTTNVPSTQGTQNPHHFPQPQPQPQPQPQPHQILRHQPYYYY 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00534 355 SMART B3_2 81 189 IPR003340 GO:0003677
Phco6g00534 355 Gene3D - 69 198 IPR015300 -
Phco6g00534 355 ProSiteProfiles B3 DNA-binding domain profile. 81 189 IPR003340 GO:0003677
Phco6g00534 355 MobiDBLite consensus disorder prediction 66 83 - -
Phco6g00534 355 SUPERFAMILY DNA-binding pseudobarrel domain 76 188 IPR015300 -
Phco6g00534 355 CDD B3_DNA 79 179 IPR003340 GO:0003677
Phco6g00534 355 MobiDBLite consensus disorder prediction 193 219 - -
Phco6g00534 355 MobiDBLite consensus disorder prediction 305 329 - -
Phco6g00534 355 Pfam B3 DNA binding domain 81 188 IPR003340 GO:0003677
Phco6g00534 355 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 57 306 IPR044800 GO:0003700
Phco6g00534 355 MobiDBLite consensus disorder prediction 254 286 - -
Phco6g00534 355 MobiDBLite consensus disorder prediction 330 344 - -
Phco6g00534 355 MobiDBLite consensus disorder prediction 19 47 - -
Phco6g00534 355 MobiDBLite consensus disorder prediction 19 89 - -
Phco6g00534 355 MobiDBLite consensus disorder prediction 299 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00534 Phco-Chr6 5164055 5165939 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco6g00534 B3 9.1e-29 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00534 6 5164055 5165939 Phco6g00534 6 5164055 5165939 ECH
Phco2g02217 2 52824911 52827590 Phco6g00534 6 5164055 5165939 PCT