Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00523 ATGGAATCCTGTTGGGGCAAAACTTCAGAACAAACTTGGAAGCCCTATTGCATGTATTGGGGGGAAGTTTTGGGTGGCCATATGGGTAGGGGTGTGATGGAGGAGGAGGTATGGAGGAAGGGACCTTGGACTGCTGAAGAAGACAGGTTGCTTGTTGAGTATGTCAGGTTGCATGGTGAAGGAAGATGGAACTCTGTTTCTAGGCTTGCAGGGTTGAAAAGAAATGGGAAGAGCTGCAGATTGAGGTGGGTGAATTATCTGAGGCCTGACCTCAAGAGGGGACAGATAACACCACAAGAAGAGAGCATAATTGTAGAGTTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATAGCAAGGAGTTTACCAGGGAGAACTGACAATGAGATAAAAAACTATTGGAGGACTCATTTCAAGAAAAAGGCTAAAAGTCCCGCTGATGCAGCCGAGAAGGCAAGAAATAAACTCCTGAGGAAGCAGCAATTTCACCAGCAACAGTTGCAGCAGCAACAGTATCAGGCACAACAACAACTACAGTTCAACTTTGACATGAAAGGCATCATGGCCTTGCTAGAGGACAACACACATAGAGCACCTTATATATCTCAATCAAGAGAAGAAATGGTAAACATGCAGCAAAACACCACAGAGGAGCAAGGGTTCTTGTACTCCATGCTCAATGGCCACCCTTCTGCACCCGAGACCTCAGCTGAAGAAAGTTTGTGGGATGATGGTCTGTGGAACCTGGATCATGGTAATTTCACTGTAGCTAGTGCAGCAAGCAAAGTTGGTCTAGATCTATACAATTTAGTTGCTCCCTTCTGTTAA 828 0.4577 MESCWGKTSEQTWKPYCMYWGEVLGGHMGRGVMEEEVWRKGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIIVELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPADAAEKARNKLLRKQQFHQQQLQQQQYQAQQQLQFNFDMKGIMALLEDNTHRAPYISQSREEMVNMQQNTTEEQGFLYSMLNGHPSAPETSAEESLWDDGLWNLDHGNFTVASAASKVGLDLYNLVAPFC 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00523 275 Pfam Myb-like DNA-binding domain 93 137 IPR001005 -
Phco6g00523 275 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Phco6g00523 275 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Phco6g00523 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Phco6g00523 275 Gene3D - 40 92 - -
Phco6g00523 275 CDD SANT 42 87 IPR001005 -
Phco6g00523 275 CDD SANT 97 138 IPR001005 -
Phco6g00523 275 ProSiteProfiles Myb-like domain profile. 39 87 IPR001005 -
Phco6g00523 275 FunFam Myb transcription factor 40 92 - -
Phco6g00523 275 SUPERFAMILY Homeodomain-like 39 134 IPR009057 -
Phco6g00523 275 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 33 232 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phco6g00523 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 87 IPR017930 -
Phco6g00523 275 Coils Coil 146 166 - -
Phco6g00523 275 Gene3D - 97 141 - -
Phco6g00523 275 SMART sant 39 89 IPR001005 -
Phco6g00523 275 SMART sant 92 140 IPR001005 -
Phco6g00523 275 FunFam MYB-related transcription factor 97 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00523 Phco-Chr6 5092495 5093764 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g00523 Myb_DNA-binding 2.5e-16 CL0123