Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00490 ATGGGCAATAGGTGGGCAGCAGGTTTGAGGGGTGTGCCCGAGAGGAAGCAGAACCAATGTAGTGCTATGGCTGGTGTGAGGGAACAAGATCAGTACATGCCAATCGCAAATGTGCTAAGGATCATGCGAAGGATTTTGCCACCGCATGCAAAGATTTCTGATGAGGCAAAGGAGACCGTCCAAGAATGTGTGTCTGAGTACATCAGTTTCATCACAGCTGAAGCAAATGATCGCTGTCAGCGTGAACAGCGCAAGACTGTGACTGCTGAAGATGTGTTGTGGGCTATGGGAAAGCTTGGCTTTGATGAATATGCTCAATCTCTTTCTGTTTACCTCACTCGCTATCGCCAGAGTGAAGGAGAACGTTTGTCTGTGAGACGTGCTTCAACTTCTGCTCCTCCATTTGAGATGAACCCACCTTATCCACCTTACCCTCATGGTTTTGGAATGTTTGACTATGATCCATCACAATCCATAGCTTCTTCTTCAAGATCAGGTGGATTTGTTCCCAACTTTGATCCTTATGCCAATGCACCAAAACCTACTGATGATAACATGTGA 561 0.4635 MGNRWAAGLRGVPERKQNQCSAMAGVREQDQYMPIANVLRIMRRILPPHAKISDEAKETVQECVSEYISFITAEANDRCQREQRKTVTAEDVLWAMGKLGFDEYAQSLSVYLTRYRQSEGERLSVRRASTSAPPFEMNPPYPPYPHGFGMFDYDPSQSIASSSRSGGFVPNFDPYANAPKPTDDNM 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00490 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco6g00490 186 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Phco6g00490 186 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Phco6g00490 186 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Phco6g00490 186 Gene3D Histone, subunit A 20 135 IPR009072 GO:0046982
Phco6g00490 186 FunFam Nuclear transcription factor Y subunit B-6 21 135 - -
Phco6g00490 186 SUPERFAMILY Histone-fold 29 130 IPR009072 GO:0046982
Phco6g00490 186 MobiDBLite consensus disorder prediction 155 186 - -
Phco6g00490 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 96 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00490 Phco-Chr6 4690343 4695571 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco6g00490 CBFD_NFYB_HMF 3.2e-24 CL0012