Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00453 ATGTTGAGAATGAATAAAGGGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGACATATTTGGTATCATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCGAGGAGTTCAGGATGAGGAGAGATGGGATTGCAGAGAGGTTGTTTTCTTGCAGACTGAGTCGATGTTTGGGGTGTGAGCGGGTGGAATTGGCAGTGTCAGTGGATGATGATGGCGGTGAAGGTGGTGGTGGTTGTAAGAGTGGCTTTGATGGGGCTGGTGCTGAGTTTGAGTCTGAAGCAGGCGCTAGTAAAGAGAGCAAGGTCAATAGTGCCAGAGATGATGATCCTGGAGAGATGAACACGAACCGAGTGAGCAATTACAGCTATGGGGAAGCTGAGGCGTTGACCGATGAGATTGAAGAAGAGTCACAATATGTTGAAGAGGTATTCAGGATCAAGGATGTTTTGCTTAACTGTGAAGAAGCGTCTGATTCAGTATTGTTTGATTCATTGAGGAGGCTTCAGCTGATGGAACTCACAGTGGATCTTTTGAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGAAAGCATGGATCAAGTGACATTTATCGACTCGCACGGACTCTTATCGATGGCTGGAAAGAAATGGTGGATGCGTGGGTCAAAGCTACCACAGCTATTGCAGGTTCAGAAGGTACTCCAGATTCAGTAAATCCATCTGTTGTTGAGGATGAAGAAGGGCTTCCTTCACCTCCTATGGATGAAGGGGCTTTATTTGCTGCTCCAACTGGTTCTATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACATAGTGGGGAATTCATCAGAAACCGTGATCATGGAAGAAGTCTAACTCTGAACAGTAAAAATACAGCAAAGAGGAAACCCCAGGCATCAAATGAGGCAAACATTATTGCCAAGGACAGTAAGGGTCAGCAAGCAAAGAAAAATGAGGCTTCTGTGAGGCCAAATCGACCAGTTATCGGTGATTCTGGTCCTGGCAGACCACCAAAATCAACCATGCAGAAGAAAGGCCATATTGAGCCCCAGGTGCAACAAAATACAGTGAAGAGTACTATCCCAAAAAATCCTTATGTTCGTCAGCTAGATAAACCCAGGTGTTCGGATGATGCTTCAGTCAAAGTGAAGTTAGAAGCCAGTAAGAGGAAACTTCAGGAGCGGTATCAACAAGTTGAAAATGCTAAGAGGCAGCGGACAGTACAGGTTATGGAGTTGCATGACCTCCCAAAGCAAGGTATTGGCCACCGAAATTCGCATCTCAAACCCGGAAATCAAAGGAAGCAATGGGGTCAGGGACGAAGATAG 1368 0.4605 MLRMNKGSLDYWRNYFGAANSDIFGIIDHAIMVAASDCPEEFRMRRDGIAERLFSCRLSRCLGCERVELAVSVDDDGGEGGGGCKSGFDGAGAEFESEAGASKESKVNSARDDDPGEMNTNRVSNYSYGEAEALTDEIEEESQYVEEVFRIKDVLLNCEEASDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHGSSDIYRLARTLIDGWKEMVDAWVKATTAIAGSEGTPDSVNPSVVEDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPRHSGEFIRNRDHGRSLTLNSKNTAKRKPQASNEANIIAKDSKGQQAKKNEASVRPNRPVIGDSGPGRPPKSTMQKKGHIEPQVQQNTVKSTIPKNPYVRQLDKPRCSDDASVKVKLEASKRKLQERYQQVENAKRQRTVQVMELHDLPKQGIGHRNSHLKPGNQRKQWGQGRR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00453 455 Pfam TFIIS helical bundle-like domain 170 218 IPR017923 -
Phco6g00453 455 MobiDBLite consensus disorder prediction 97 123 - -
Phco6g00453 455 MobiDBLite consensus disorder prediction 230 251 - -
Phco6g00453 455 MobiDBLite consensus disorder prediction 298 321 - -
Phco6g00453 455 MobiDBLite consensus disorder prediction 275 391 - -
Phco6g00453 455 SMART TFS2_5 148 220 IPR003617 GO:0005634
Phco6g00453 455 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 143 232 IPR035441 -
Phco6g00453 455 ProSiteProfiles TFIIS N-terminal domain profile. 146 221 IPR017923 -
Phco6g00453 455 MobiDBLite consensus disorder prediction 99 118 - -
Phco6g00453 455 CDD TFIIS_I 146 219 - -
Phco6g00453 455 MobiDBLite consensus disorder prediction 359 376 - -
Phco6g00453 455 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 229 IPR035441 -
Phco6g00453 455 MobiDBLite consensus disorder prediction 431 455 - -
Phco6g00453 455 Coils Coil 395 422 - -
Phco6g00453 455 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 443 IPR044805 -
Phco6g00453 455 MobiDBLite consensus disorder prediction 277 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00453 Phco-Chr6 4244904 4251427 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Phco6g00453 Med26 4.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00453 6 4244904 4251427 Phco6g00453 6 4244904 4251427 ECH
Phco2g01400 2 43123871 43126561 Phco6g00453 6 4244904 4251427 PCT